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Page 1
A Case for Data Commons: Toward Data Science as a Service.
Grossman RL, Heath A, Murphy M, Patterson M, Wells W. Grossman RL, et al. Among authors: heath a. Comput Sci Eng. 2016 Sep-Oct;18(5):10-20. doi: 10.1109/MCSE.2016.92. Epub 2016 Aug 24. Comput Sci Eng. 2016. PMID: 29033693 Free PMC article.
Toward more transparent and reproducible omics studies through a common metadata checklist and data publications.
Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, Frishman D, Grossman R, Heath A, Higdon R, Hutz MH, Janko I, Jiang L, Joshi S, Kel A, Kemnitz JW, Kohane IS, Kolker N, Lancet D, Lee E, Li W, Lisitsa A, Llerena A, Macnealy-Koch C, Marshall JC, Masuzzo P, May A, Mias G, Monroe M, Montague E, Mooney S, Nesvizhskii A, Noronha S, Omenn G, Rajasimha H, Ramamoorthy P, Sheehan J, Smarr L, Smith CV, Smith T, Snyder M, Rapole S, Srivastava S, Stanberry L, Stewart E, Toppo S, Uetz P, Verheggen K, Voy BH, Warnich L, Wilhelm SW, Yandl G. Kolker E, et al. Among authors: heath a. OMICS. 2014 Jan;18(1):10-4. doi: 10.1089/omi.2013.0149. OMICS. 2014. PMID: 24456465 Free PMC article.
Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets.
Heath AP, Greenway M, Powell R, Spring J, Suarez R, Hanley D, Bandlamudi C, McNerney ME, White KP, Grossman RL. Heath AP, et al. J Am Med Inform Assoc. 2014 Nov-Dec;21(6):969-75. doi: 10.1136/amiajnl-2013-002155. Epub 2014 Jan 24. J Am Med Inform Assoc. 2014. PMID: 24464852 Free PMC article.
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.
Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, Frishman D, Grossman R, Heath A, Higdon R, Hutz MH, Janko I, Jiang L, Joshi S, Kel A, Kemnitz JW, Kohane IS, Kolker N, Lancet D, Lee E, Li W, Lisitsa A, Llerena A, MacNealy-Koch C, Marshall JC, Masuzzo P, May A, Mias G, Monroe M, Montague E, Mooney S, Nesvizhskii A, Noronha S, Omenn G, Rajasimha H, Ramamoorthy P, Sheehan J, Smarr L, Smith CV, Smith T, Snyder M, Rapole S, Srivastava S, Stanberry L, Stewart E, Toppo S, Uetz P, Verheggen K, Voy BH, Warnich L, Wilhelm SW, Yandl G. Kolker E, et al. Among authors: heath a. Big Data. 2013 Dec;1(4):196-201. doi: 10.1089/big.2013.0039. Big Data. 2013. PMID: 27447251
Toward a Shared Vision for Cancer Genomic Data.
Grossman RL, Heath AP, Ferretti V, Varmus HE, Lowy DR, Kibbe WA, Staudt LM. Grossman RL, et al. Among authors: heath ap. N Engl J Med. 2016 Sep 22;375(12):1109-12. doi: 10.1056/NEJMp1607591. N Engl J Med. 2016. PMID: 27653561 Free PMC article. No abstract available.
Data Commons to Support Pediatric Cancer Research.
Volchenboum SL, Cox SM, Heath A, Resnick A, Cohn SL, Grossman R. Volchenboum SL, et al. Among authors: heath a. Am Soc Clin Oncol Educ Book. 2017;37:746-752. doi: 10.1200/EDBK_175029. Am Soc Clin Oncol Educ Book. 2017. PMID: 28561664 Free article. Review.
Developing Cancer Informatics Applications and Tools Using the NCI Genomic Data Commons API.
Wilson S, Fitzsimons M, Ferguson M, Heath A, Jensen M, Miller J, Murphy MW, Porter J, Sahni H, Staudt L, Tang Y, Wang Z, Yu C, Zhang J, Ferretti V, Grossman RL; GDC Project. Wilson S, et al. Among authors: heath a. Cancer Res. 2017 Nov 1;77(21):e15-e18. doi: 10.1158/0008-5472.CAN-17-0598. Cancer Res. 2017. PMID: 29092930 Free PMC article.
High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations.
Zhang Y, Chen F, Fonseca NA, He Y, Fujita M, Nakagawa H, Zhang Z, Brazma A; PCAWG Transcriptome Working Group; PCAWG Structural Variation Working Group; Creighton CJ; PCAWG Consortium. Zhang Y, et al. Nat Commun. 2020 Feb 5;11(1):736. doi: 10.1038/s41467-019-13885-w. Nat Commun. 2020. PMID: 32024823 Free PMC article.
Integrative pathway enrichment analysis of multivariate omics data.
Paczkowska M, Barenboim J, Sintupisut N, Fox NS, Zhu H, Abd-Rabbo D, Mee MW, Boutros PC; PCAWG Drivers and Functional Interpretation Working Group; Reimand J; PCAWG Consortium. Paczkowska M, et al. Nat Commun. 2020 Feb 5;11(1):735. doi: 10.1038/s41467-019-13983-9. Nat Commun. 2020. PMID: 32024846 Free PMC article.
1,787 results