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The RNA helicase DDX5 is a reprogramming roadblock.
Bourgeois CF, Auboeuf D. Bourgeois CF, et al. Among authors: auboeuf d. Stem Cell Investig. 2017 Sep 27;4:79. doi: 10.21037/sci.2017.09.04. eCollection 2017. Stem Cell Investig. 2017. PMID: 29057251 Free PMC article. No abstract available.
RNA helicases DDX5 and DDX17 dynamically orchestrate transcription, miRNA, and splicing programs in cell differentiation.
Dardenne E, Polay Espinoza M, Fattet L, Germann S, Lambert MP, Neil H, Zonta E, Mortada H, Gratadou L, Deygas M, Chakrama FZ, Samaan S, Desmet FO, Tranchevent LC, Dutertre M, Rimokh R, Bourgeois CF, Auboeuf D. Dardenne E, et al. Among authors: auboeuf d. Cell Rep. 2014 Jun 26;7(6):1900-13. doi: 10.1016/j.celrep.2014.05.010. Epub 2014 Jun 6. Cell Rep. 2014. PMID: 24910439 Free article.
Identification of protein features encoded by alternative exons using Exon Ontology.
Tranchevent LC, Aubé F, Dulaurier L, Benoit-Pilven C, Rey A, Poret A, Chautard E, Mortada H, Desmet FO, Chakrama FZ, Moreno-Garcia MA, Goillot E, Janczarski S, Mortreux F, Bourgeois CF, Auboeuf D. Tranchevent LC, et al. Among authors: auboeuf d. Genome Res. 2017 Jun;27(6):1087-1097. doi: 10.1101/gr.212696.116. Epub 2017 Apr 18. Genome Res. 2017. PMID: 28420690 Free PMC article.
Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data.
Benoit-Pilven C, Marchet C, Chautard E, Lima L, Lambert MP, Sacomoto G, Rey A, Cologne A, Terrone S, Dulaurier L, Claude JB, Bourgeois CF, Auboeuf D, Lacroix V. Benoit-Pilven C, et al. Among authors: auboeuf d. Sci Rep. 2018 Mar 9;8(1):4307. doi: 10.1038/s41598-018-21770-7. Sci Rep. 2018. PMID: 29523794 Free PMC article.
Interplay between coding and exonic splicing regulatory sequences.
Fontrodona N, Aubé F, Claude JB, Polvèche H, Lemaire S, Tranchevent LC, Modolo L, Mortreux F, Bourgeois CF, Auboeuf D. Fontrodona N, et al. Among authors: auboeuf d. Genome Res. 2019 May;29(5):711-722. doi: 10.1101/gr.241315.118. Epub 2019 Apr 8. Genome Res. 2019. PMID: 30962178 Free PMC article.
Integrative Cell Type-Specific Multi-Omics Approaches Reveal Impaired Programs of Glial Cell Differentiation in Mouse Culture Models of DM1.
González-Barriga A, Lallemant L, Dincã DM, Braz SO, Polvèche H, Magneron P, Pionneau C, Huguet-Lachon A, Claude JB, Chhuon C, Guerrera IC, Bourgeois CF, Auboeuf D, Gourdon G, Gomes-Pereira M. González-Barriga A, et al. Among authors: auboeuf d. Front Cell Neurosci. 2021 May 5;15:662035. doi: 10.3389/fncel.2021.662035. eCollection 2021. Front Cell Neurosci. 2021. PMID: 34025359 Free PMC article.
84 results