Lelieveldt BPF - Search Results

1

Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types.

van Unen V, Höllt T, Pezzotti N, Li N, Reinders MJT, Eisemann E, Koning F, Vilanova A, Lelieveldt BPF. van Unen V, et al. Among authors: lelieveldt bpf. Nat Commun. 2017 Nov 23;8(1):1740. doi: 10.1038/s41467-017-01689-9. Nat Commun. 2017. PMID: 29170529 Free PMC article.

2

Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings.

Mahfouz A, van de Giessen M, van der Maaten L, Huisman S, Reinders M, Hawrylycz MJ, Lelieveldt BP. Mahfouz A, et al. Methods. 2015 Feb;73:79-89. doi: 10.1016/j.ymeth.2014.10.004. Epub 2014 Oct 16. Methods. 2015. PMID: 25449901 Free article.

3

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

Babaei S, Mahfouz A, Hulsman M, Lelieveldt BP, de Ridder J, Reinders M. Babaei S, et al. PLoS Comput Biol. 2015 May 12;11(5):e1004221. doi: 10.1371/journal.pcbi.1004221. eCollection 2015 May. PLoS Comput Biol. 2015. PMID: 25965262 Free PMC article.

4

Shared Pathways Among Autism Candidate Genes Determined by Co-expression Network Analysis of the Developing Human Brain Transcriptome.

Mahfouz A, Ziats MN, Rennert OM, Lelieveldt BP, Reinders MJ. Mahfouz A, et al. J Mol Neurosci. 2015 Dec;57(4):580-94. doi: 10.1007/s12031-015-0641-3. Epub 2015 Sep 23. J Mol Neurosci. 2015. PMID: 26399424 Free PMC article.

5

Genome-wide coexpression of steroid receptors in the mouse brain: Identifying signaling pathways and functionally coordinated regions.

Mahfouz A, Lelieveldt BP, Grefhorst A, van Weert LT, Mol IM, Sips HC, van den Heuvel JK, Datson NA, Visser JA, Reinders MJ, Meijer OC. Mahfouz A, et al. Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):2738-43. doi: 10.1073/pnas.1520376113. Epub 2016 Jan 25. Proc Natl Acad Sci U S A. 2016. PMID: 26811448 Free PMC article.

6

Gene co-expression analysis identifies brain regions and cell types involved in migraine pathophysiology: a GWAS-based study using the Allen Human Brain Atlas.

Eising E, Huisman SMH, Mahfouz A, Vijfhuizen LS, Anttila V, Winsvold BS, Kurth T, Ikram MA, Freilinger T, Kaprio J, Boomsma DI, van Duijn CM, Järvelin MR, Zwart JA, Quaye L, Strachan DP, Kubisch C, Dichgans M, Davey Smith G, Stefansson K, Palotie A, Chasman DI, Ferrari MD, Terwindt GM, de Vries B, Nyholt DR, Lelieveldt BPF, van den Maagdenberg AMJM, Reinders MJT. Eising E, et al. Among authors: lelieveldt bpf. Hum Genet. 2016 Apr;135(4):425-439. doi: 10.1007/s00439-016-1638-x. Epub 2016 Feb 22. Hum Genet. 2016. PMID: 26899160 Free PMC article.

7

Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets.

van Unen V, Li N, Molendijk I, Temurhan M, Höllt T, van der Meulen-de Jong AE, Verspaget HW, Mearin ML, Mulder CJ, van Bergen J, Lelieveldt BP, Koning F. van Unen V, et al. Immunity. 2016 May 17;44(5):1227-39. doi: 10.1016/j.immuni.2016.04.014. Epub 2016 May 10. Immunity. 2016. PMID: 27178470 Free article.

8

Data-driven identification of prognostic tumor subpopulations using spatially mapped t-SNE of mass spectrometry imaging data.

Abdelmoula WM, Balluff B, Englert S, Dijkstra J, Reinders MJ, Walch A, McDonnell LA, Lelieveldt BP. Abdelmoula WM, et al. Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12244-12249. doi: 10.1073/pnas.1510227113. Epub 2016 Oct 10. Proc Natl Acad Sci U S A. 2016. PMID: 27791011 Free PMC article.

9

Brain transcriptome atlases: a computational perspective.

Mahfouz A, Huisman SMH, Lelieveldt BPF, Reinders MJT. Mahfouz A, et al. Among authors: lelieveldt bpf. Brain Struct Funct. 2017 May;222(4):1557-1580. doi: 10.1007/s00429-016-1338-2. Epub 2016 Dec 1. Brain Struct Funct. 2017. PMID: 27909802 Free PMC article. Review.

10

Approximated and User Steerable tSNE for Progressive Visual Analytics.

Pezzotti N, Lelieveldt BPF, Van Der Maaten L, Hollt T, Eisemann E, Vilanova A. Pezzotti N, et al. Among authors: lelieveldt bpf. IEEE Trans Vis Comput Graph. 2017 Jul;23(7):1739-1752. doi: 10.1109/TVCG.2016.2570755. Epub 2016 May 19. IEEE Trans Vis Comput Graph. 2017. PMID: 28113434

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