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@MInter: automated text-mining of microbial interactions.
Lim KM, Li C, Chng KR, Nagarajan N. Lim KM, et al. Among authors: li c. Bioinformatics. 2016 Oct 1;32(19):2981-7. doi: 10.1093/bioinformatics/btw357. Epub 2016 Jun 16. Bioinformatics. 2016. PMID: 27312413
Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.
Bertrand D, Shaw J, Kalathiyappan M, Ng AHQ, Kumar MS, Li C, Dvornicic M, Soldo JP, Koh JY, Tong C, Ng OT, Barkham T, Young B, Marimuthu K, Chng KR, Sikic M, Nagarajan N. Bertrand D, et al. Among authors: li c. Nat Biotechnol. 2019 Aug;37(8):937-944. doi: 10.1038/s41587-019-0191-2. Epub 2019 Jul 29. Nat Biotechnol. 2019. PMID: 31359005
Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma.
Chng KR, Chan SH, Ng AHQ, Li C, Jusakul A, Bertrand D, Wilm A, Choo SP, Tan DMY, Lim KH, Soetinko R, Ong CK, Duda DG, Dima S, Popescu I, Wongkham C, Feng Z, Yeoh KG, Teh BT, Yongvanit P, Wongkham S, Bhudhisawasdi V, Khuntikeo N, Tan P, Pairojkul C, Ngeow J, Nagarajan N. Chng KR, et al. Among authors: li c. EBioMedicine. 2016 Jun;8:195-202. doi: 10.1016/j.ebiom.2016.04.034. Epub 2016 May 6. EBioMedicine. 2016. PMID: 27428430 Free PMC article.
Determination of isoform-specific RNA structure with nanopore long reads.
Aw JGA, Lim SW, Wang JX, Lambert FRP, Tan WT, Shen Y, Zhang Y, Kaewsapsak P, Li C, Ng SB, Vardy LA, Tan MH, Nagarajan N, Wan Y. Aw JGA, et al. Among authors: li c. Nat Biotechnol. 2021 Mar;39(3):336-346. doi: 10.1038/s41587-020-0712-z. Epub 2020 Oct 26. Nat Biotechnol. 2021. PMID: 33106685
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment.
Chng KR, Li C, Bertrand D, Ng AHQ, Kwah JS, Low HM, Tong C, Natrajan M, Zhang MH, Xu L, Ko KKK, Ho EXP, Av-Shalom TV, Teo JWP, Khor CC; MetaSUB Consortium; Chen SL, Mason CE, Ng OT, Marimuthu K, Ang B, Nagarajan N. Chng KR, et al. Among authors: li c. Nat Med. 2020 Jun;26(6):941-951. doi: 10.1038/s41591-020-0894-4. Epub 2020 Jun 8. Nat Med. 2020. PMID: 32514171 Free PMC article.
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