Swanson JMJ - Search Results

1

Multiscale Kinetic Modeling Reveals an Ensemble of Cl^-/H⁺ Exchange Pathways in ClC-ec1 Antiporter.

Mayes HB, Lee S, White AD, Voth GA, Swanson JMJ. Mayes HB, et al. Among authors: swanson jmj. J Am Chem Soc. 2018 Feb 7;140(5):1793-1804. doi: 10.1021/jacs.7b11463. Epub 2018 Jan 30. J Am Chem Soc. 2018. PMID: 29332400 Free PMC article.

2

Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations.

Swanson JM, Maupin CM, Chen H, Petersen MK, Xu J, Wu Y, Voth GA. Swanson JM, et al. J Phys Chem B. 2007 May 3;111(17):4300-14. doi: 10.1021/jp070104x. Epub 2007 Apr 13. J Phys Chem B. 2007. PMID: 17429993 Free PMC article. Review.

3

Coarse-graining in interaction space: a systematic approach for replacing long-range electrostatics with short-range potentials.

Izvekov S, Swanson JM, Voth GA. Izvekov S, et al. J Phys Chem B. 2008 Apr 17;112(15):4711-24. doi: 10.1021/jp710339n. Epub 2008 Mar 27. J Phys Chem B. 2008. PMID: 18366209

4

Intricate role of water in proton transport through cytochrome c oxidase.

Lee HJ, Svahn E, Swanson JM, Lepp H, Voth GA, Brzezinski P, Gennis RB. Lee HJ, et al. J Am Chem Soc. 2010 Nov 17;132(45):16225-39. doi: 10.1021/ja107244g. Epub 2010 Oct 21. J Am Chem Soc. 2010. PMID: 20964330 Free PMC article.

5

Multiscale simulation reveals a multifaceted mechanism of proton permeation through the influenza A M2 proton channel.

Liang R, Li H, Swanson JM, Voth GA. Liang R, et al. Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9396-401. doi: 10.1073/pnas.1401997111. Epub 2014 Jun 16. Proc Natl Acad Sci U S A. 2014. PMID: 24979779 Free PMC article.

6

Benchmark Study of the SCC-DFTB Approach for a Biomolecular Proton Channel.

Liang R, Swanson JM, Voth GA. Liang R, et al. J Chem Theory Comput. 2014 Jan 14;10(1):451-462. doi: 10.1021/ct400832r. J Chem Theory Comput. 2014. PMID: 25104919 Free PMC article.

7

Hydrated Excess Protons Can Create Their Own Water Wires.

Peng Y, Swanson JM, Kang SG, Zhou R, Voth GA. Peng Y, et al. J Phys Chem B. 2015 Jul 23;119(29):9212-8. doi: 10.1021/jp5095118. Epub 2014 Nov 12. J Phys Chem B. 2015. PMID: 25369445 Free PMC article.

8

Computationally Efficient Multiscale Reactive Molecular Dynamics to Describe Amino Acid Deprotonation in Proteins.

Lee S, Liang R, Voth GA, Swanson JM. Lee S, et al. J Chem Theory Comput. 2016 Feb 9;12(2):879-91. doi: 10.1021/acs.jctc.5b01109. Epub 2016 Jan 20. J Chem Theory Comput. 2016. PMID: 26734942 Free PMC article.

9

Multiscale Simulations Reveal Key Aspects of the Proton Transport Mechanism in the ClC-ec1 Antiporter.

Lee S, Swanson JM, Voth GA. Lee S, et al. Biophys J. 2016 Mar 29;110(6):1334-45. doi: 10.1016/j.bpj.2016.02.014. Biophys J. 2016. PMID: 27028643 Free PMC article.

10

Coupling Protein Dynamics with Proton Transport in Human Carbonic Anhydrase II.

Taraphder S, Maupin CM, Swanson JM, Voth GA. Taraphder S, et al. J Phys Chem B. 2016 Aug 25;120(33):8389-404. doi: 10.1021/acs.jpcb.6b02166. Epub 2016 Apr 20. J Phys Chem B. 2016. PMID: 27063577 Free PMC article.

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