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The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern.
De La Vega FM, Isaac H, Collins A, Scafe CR, Halldórsson BV, Su X, Lippert RA, Wang Y, Laig-Webster M, Koehler RT, Ziegle JS, Wogan LT, Stevens JF, Leinen KM, Olson SJ, Guegler KJ, You X, Xu LH, Hemken HG, Kalush F, Itakura M, Zheng Y, de Thé G, O'Brien SJ, Clark AG, Istrail S, Hunkapiller MW, Spier EG, Gilbert DA. De La Vega FM, et al. Among authors: de the g. Genome Res. 2005 Apr;15(4):454-62. doi: 10.1101/gr.3241705. Epub 2005 Mar 21. Genome Res. 2005. PMID: 15781572 Free PMC article.
The SNPlex genotyping system: a flexible and scalable platform for SNP genotyping.
Tobler AR, Short S, Andersen MR, Paner TM, Briggs JC, Lambert SM, Wu PP, Wang Y, Spoonde AY, Koehler RT, Peyret N, Chen C, Broomer AJ, Ridzon DA, Zhou H, Hoo BS, Hayashibara KC, Leong LN, Ma CN, Rosenblum BB, Day JP, Ziegle JS, De La Vega FM, Rhodes MD, Hennessy KM, Wenz HM. Tobler AR, et al. Among authors: de la vega fm. J Biomol Tech. 2005 Dec;16(4):398-406. J Biomol Tech. 2005. PMID: 16522862 Free PMC article.
A deep-learning-based RNA-seq germline variant caller.
Cook DE, Venkat A, Yelizarov D, Pouliot Y, Chang PC, Carroll A, De La Vega FM. Cook DE, et al. Among authors: de la vega fm. Bioinform Adv. 2023 Jun 13;3(1):vbad062. doi: 10.1093/bioadv/vbad062. eCollection 2023. Bioinform Adv. 2023. PMID: 37416509 Free PMC article.
A second-generation combined linkage physical map of the human genome.
Matise TC, Chen F, Chen W, De La Vega FM, Hansen M, He C, Hyland FC, Kennedy GC, Kong X, Murray SS, Ziegle JS, Stewart WC, Buyske S. Matise TC, et al. Among authors: de la vega fm. Genome Res. 2007 Dec;17(12):1783-6. doi: 10.1101/gr.7156307. Epub 2007 Nov 7. Genome Res. 2007. PMID: 17989245 Free PMC article.
Demographic history and rare allele sharing among human populations.
Gravel S, Henn BM, Gutenkunst RN, Indap AR, Marth GT, Clark AG, Yu F, Gibbs RA; 1000 Genomes Project; Bustamante CD. Gravel S, et al. Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):11983-8. doi: 10.1073/pnas.1019276108. Epub 2011 Jul 5. Proc Natl Acad Sci U S A. 2011. PMID: 21730125 Free PMC article.
139 results