Porter JR - Search Results

1

Electron Cryo-microscopy Structure of Ebola Virus Nucleoprotein Reveals a Mechanism for Nucleocapsid-like Assembly.

Su Z, Wu C, Shi L, Luthra P, Pintilie GD, Johnson B, Porter JR, Ge P, Chen M, Liu G, Frederick TE, Binning JM, Bowman GR, Zhou ZH, Basler CF, Gross ML, Leung DW, Chiu W, Amarasinghe GK. Su Z, et al. Among authors: porter jr. Cell. 2018 Feb 22;172(5):966-978.e12. doi: 10.1016/j.cell.2018.02.009. Cell. 2018. PMID: 29474922 Free PMC article.

2

Choice of Adaptive Sampling Strategy Impacts State Discovery, Transition Probabilities, and the Apparent Mechanism of Conformational Changes.

Zimmerman MI, Porter JR, Sun X, Silva RR, Bowman GR. Zimmerman MI, et al. Among authors: porter jr. J Chem Theory Comput. 2018 Nov 13;14(11):5459-5475. doi: 10.1021/acs.jctc.8b00500. Epub 2018 Oct 23. J Chem Theory Comput. 2018. PMID: 30240203 Free PMC article.

3

Enspara: Modeling molecular ensembles with scalable data structures and parallel computing.

Porter JR, Zimmerman MI, Bowman GR. Porter JR, et al. J Chem Phys. 2019 Jan 28;150(4):044108. doi: 10.1063/1.5063794. J Chem Phys. 2019. PMID: 30709308 Free PMC article.

4

Cooperative Changes in Solvent Exposure Identify Cryptic Pockets, Switches, and Allosteric Coupling.

Porter JR, Moeder KE, Sibbald CA, Zimmerman MI, Hart KM, Greenberg MJ, Bowman GR. Porter JR, et al. Biophys J. 2019 Mar 5;116(5):818-830. doi: 10.1016/j.bpj.2018.11.3144. Epub 2019 Jan 25. Biophys J. 2019. PMID: 30744991 Free PMC article.

5

Antagonism between substitutions in β-lactamase explains a path not taken in the evolution of bacterial drug resistance.

Brown CA, Hu L, Sun Z, Patel MP, Singh S, Porter JR, Sankaran B, Prasad BVV, Bowman GR, Palzkill T. Brown CA, et al. Among authors: porter jr. J Biol Chem. 2020 May 22;295(21):7376-7390. doi: 10.1074/jbc.RA119.012489. Epub 2020 Apr 16. J Biol Chem. 2020. PMID: 32299911 Free PMC article.

6

Conformational distributions of isolated myosin motor domains encode their mechanochemical properties.

Porter JR, Meller A, Zimmerman MI, Greenberg MJ, Bowman GR. Porter JR, et al. Elife. 2020 May 29;9:e55132. doi: 10.7554/eLife.55132. Elife. 2020. PMID: 32479265 Free PMC article.

7

[No title available]

[No authors listed] [No authors listed] PMID: 33516358

8

Naturally Occurring Genetic Variants in the Oxytocin Receptor Alter Receptor Signaling Profiles.

Malik M, Ward MD, Fang Y, Porter JR, Zimmerman MI, Koelblen T, Roh M, Frolova AI, Burris TP, Bowman GR, Imoukhuede PI, England SK. Malik M, et al. Among authors: porter jr. ACS Pharmacol Transl Sci. 2021 Sep 8;4(5):1543-1555. doi: 10.1021/acsptsci.1c00095. eCollection 2021 Oct 8. ACS Pharmacol Transl Sci. 2021. PMID: 34661073 Free PMC article.

9

A cryptic pocket in Ebola VP35 allosterically controls RNA binding.

Cruz MA, Frederick TE, Mallimadugula UL, Singh S, Vithani N, Zimmerman MI, Porter JR, Moeder KE, Amarasinghe GK, Bowman GR. Cruz MA, et al. Among authors: porter jr. Nat Commun. 2022 Apr 27;13(1):2269. doi: 10.1038/s41467-022-29927-9. Nat Commun. 2022. PMID: 35477718 Free PMC article.

10

SARS-CoV-2 simulations go exascale to predict dramatic spike opening and cryptic pockets across the proteome.

Zimmerman MI, Porter JR, Ward MD, Singh S, Vithani N, Meller A, Mallimadugula UL, Kuhn CE, Borowsky JH, Wiewiora RP, Hurley MFD, Harbison AM, Fogarty CA, Coffland JE, Fadda E, Voelz VA, Chodera JD, Bowman GR. Zimmerman MI, et al. Among authors: porter jr. Nat Chem. 2021 Jul;13(7):651-659. doi: 10.1038/s41557-021-00707-0. Epub 2021 May 24. Nat Chem. 2021. PMID: 34031561 Free PMC article.

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