Aviran S - Search Results

1

Publisher Correction: Statistical modeling of RNA structure profiling experiments enables parsimonious reconstruction of structure landscapes.

Li H, Aviran S. Li H, et al. Among authors: aviran s. Nat Commun. 2018 Mar 13;9(1):1110. doi: 10.1038/s41467-018-03519-y. Nat Commun. 2018. PMID: 29535318 Free PMC article.

2

Statistical modeling of RNA structure profiling experiments enables parsimonious reconstruction of structure landscapes.

Li H, Aviran S. Li H, et al. Among authors: aviran s. Nat Commun. 2018 Feb 9;9(1):606. doi: 10.1038/s41467-018-02923-8. Nat Commun. 2018. PMID: 29426922 Free PMC article.

3

Stability and nuclear localization of yeast telomerase depend on protein components of RNase P/MRP.

Garcia PD, Leach RW, Wadsworth GM, Choudhary K, Li H, Aviran S, Kim HD, Zakian VA. Garcia PD, et al. Among authors: aviran s. Nat Commun. 2020 May 1;11(1):2173. doi: 10.1038/s41467-020-15875-9. Nat Commun. 2020. PMID: 32358529 Free PMC article.

4

Data-directed RNA secondary structure prediction using probabilistic modeling.

Deng F, Ledda M, Vaziri S, Aviran S. Deng F, et al. Among authors: aviran s. RNA. 2016 Aug;22(8):1109-19. doi: 10.1261/rna.055756.115. Epub 2016 Jun 1. RNA. 2016. PMID: 27251549 Free PMC article.

5

Metrics for rapid quality control in RNA structure probing experiments.

Choudhary K, Shih NP, Deng F, Ledda M, Li B, Aviran S. Choudhary K, et al. Among authors: aviran s. Bioinformatics. 2016 Dec 1;32(23):3575-3583. doi: 10.1093/bioinformatics/btw501. Epub 2016 Aug 6. Bioinformatics. 2016. PMID: 27497441 Free PMC article.

6

SEQualyzer: interactive tool for quality control and exploratory analysis of high-throughput RNA structural profiling data.

Choudhary K, Ruan L, Deng F, Shih N, Aviran S. Choudhary K, et al. Among authors: aviran s. Bioinformatics. 2017 Feb 1;33(3):441-443. doi: 10.1093/bioinformatics/btw627. Bioinformatics. 2017. PMID: 28172632 Free PMC article.

7

Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions.

Choudhary K, Deng F, Aviran S. Choudhary K, et al. Among authors: aviran s. Quant Biol. 2017 Mar;5(1):3-24. doi: 10.1007/s40484-017-0093-6. Epub 2017 Mar 30. Quant Biol. 2017. PMID: 28717530 Free PMC article.

8

Automated Recognition of RNA Structure Motifs by Their SHAPE Data Signatures.

Radecki P, Ledda M, Aviran S. Radecki P, et al. Among authors: aviran s. Genes (Basel). 2018 Jun 14;9(6):300. doi: 10.3390/genes9060300. Genes (Basel). 2018. PMID: 29904019 Free PMC article.

9

Modeling and automation of sequencing-based characterization of RNA structure.

Aviran S, Trapnell C, Lucks JB, Mortimer SA, Luo S, Schroth GP, Doudna JA, Arkin AP, Pachter L. Aviran S, et al. Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11069-74. doi: 10.1073/pnas.1106541108. Epub 2011 Jun 3. Proc Natl Acad Sci U S A. 2011. PMID: 21642536 Free PMC article.

10

Rational experiment design for sequencing-based RNA structure mapping.

Aviran S, Pachter L. Aviran S, et al. RNA. 2014 Dec;20(12):1864-77. doi: 10.1261/rna.043844.113. Epub 2014 Oct 20. RNA. 2014. PMID: 25332375 Free PMC article.

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