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MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures.
Sit TP, Feord RC, Dunn AW, Chabros J, Oluigbo D, Smith HH, Burn L, Chang E, Boschi A, Yuan Y, Gibbons GM, Khayat-Khoei M, De Angelis F, Hemberg E, Hemberg M, Lancaster MA, Lakatos A, Eglen SJ, Paulsen O, Mierau SB. Sit TP, et al. Among authors: hemberg e, hemberg m. bioRxiv [Preprint]. 2024 Apr 11:2024.02.05.578738. doi: 10.1101/2024.02.05.578738. bioRxiv. 2024. Update in: Cell Rep Methods. 2024 Nov 18;4(11):100901. doi: 10.1016/j.crmeth.2024.100901 PMID: 38370637 Free PMC article. Updated. Preprint.
Bridge over troubled transcripts.
Parada GE, Hemberg M. Parada GE, et al. Among authors: hemberg m. Nat Comput Sci. 2022 Mar;2(3):142-143. doi: 10.1038/s43588-022-00219-y. Nat Comput Sci. 2022. PMID: 38177442 No abstract available.
SC3: consensus clustering of single-cell RNA-seq data.
Kiselev VY, Kirschner K, Schaub MT, Andrews T, Yiu A, Chandra T, Natarajan KN, Reik W, Barahona M, Green AR, Hemberg M. Kiselev VY, et al. Among authors: hemberg m. Nat Methods. 2017 May;14(5):483-486. doi: 10.1038/nmeth.4236. Epub 2017 Mar 27. Nat Methods. 2017. PMID: 28346451 Free PMC article.
Identifying cell populations with scRNASeq.
Andrews TS, Hemberg M. Andrews TS, et al. Among authors: hemberg m. Mol Aspects Med. 2018 Feb;59:114-122. doi: 10.1016/j.mam.2017.07.002. Epub 2017 Jul 25. Mol Aspects Med. 2018. PMID: 28712804 Free article. Review.
The Human Cell Atlas.
Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell P, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, Enard W, Farmer A, Fugger L, Göttgens B, Hacohen N, Haniffa M, Hemberg M, Kim S, Klenerman P, Kriegstein A, Lein E, Linnarsson S, Lundberg E, Lundeberg J, Majumder P, Marioni JC, Merad M, Mhlanga M, Nawijn M, Netea M, Nolan G, Pe'er D, Phillipakis A, Ponting CP, Quake S, Reik W, Rozenblatt-Rosen O, Sanes J, Satija R, Schumacher TN, Shalek A, Shapiro E, Sharma P, Shin JW, Stegle O, Stratton M, Stubbington MJT, Theis FJ, Uhlen M, van Oudenaarden A, Wagner A, Watt F, Weissman J, Wold B, Xavier R, Yosef N; Human Cell Atlas Meeting Participants. Regev A, et al. Among authors: hemberg m. Elife. 2017 Dec 5;6:e27041. doi: 10.7554/eLife.27041. Elife. 2017. PMID: 29206104 Free PMC article.
Single-cell genomics.
Hemberg M. Hemberg M. Brief Funct Genomics. 2018 Jul 1;17(4):207-208. doi: 10.1093/bfgp/ely025. Brief Funct Genomics. 2018. PMID: 30060035 Free PMC article. No abstract available.
101 results