Shmulevich I - Search Results

1

Oncogenic Signaling Pathways in The Cancer Genome Atlas.

Sanchez-Vega F, Mina M, Armenia J, Chatila WK, Luna A, La KC, Dimitriadoy S, Liu DL, Kantheti HS, Saghafinia S, Chakravarty D, Daian F, Gao Q, Bailey MH, Liang WW, Foltz SM, Shmulevich I, Ding L, Heins Z, Ochoa A, Gross B, Gao J, Zhang H, Kundra R, Kandoth C, Bahceci I, Dervishi L, Dogrusoz U, Zhou W, Shen H, Laird PW, Way GP, Greene CS, Liang H, Xiao Y, Wang C, Iavarone A, Berger AH, Bivona TG, Lazar AJ, Hammer GD, Giordano T, Kwong LN, McArthur G, Huang C, Tward AD, Frederick MJ, McCormick F, Meyerson M; Cancer Genome Atlas Research Network; Van Allen EM, Cherniack AD, Ciriello G, Sander C, Schultz N. Sanchez-Vega F, et al. Among authors: shmulevich i. Cell. 2018 Apr 5;173(2):321-337.e10. doi: 10.1016/j.cell.2018.03.035. Cell. 2018. PMID: 29625050 Free PMC article.

2

Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks.

Shmulevich I, Dougherty ER, Kim S, Zhang W. Shmulevich I, et al. Bioinformatics. 2002 Feb;18(2):261-74. doi: 10.1093/bioinformatics/18.2.261. Bioinformatics. 2002. PMID: 11847074

3

Binary analysis and optimization-based normalization of gene expression data.

Shmulevich I, Zhang W. Shmulevich I, et al. Bioinformatics. 2002 Apr;18(4):555-65. doi: 10.1093/bioinformatics/18.4.555. Bioinformatics. 2002. PMID: 12016053

4

Gene perturbation and intervention in probabilistic Boolean networks.

Shmulevich I, Dougherty ER, Zhang W. Shmulevich I, et al. Bioinformatics. 2002 Oct;18(10):1319-31. doi: 10.1093/bioinformatics/18.10.1319. Bioinformatics. 2002. PMID: 12376376

5

Identification of combination gene sets for glioma classification.

Kim S, Dougherty ER, Shmulevich I, Hess KR, Hamilton SR, Trent JM, Fuller GN, Zhang W. Kim S, et al. Among authors: shmulevich i. Mol Cancer Ther. 2002 Nov;1(13):1229-36. Mol Cancer Ther. 2002. PMID: 12479704

6

Data extraction from composite oligonucleotide microarrays.

Shmulevich I, Astola J, Cogdell D, Hamilton SR, Zhang W. Shmulevich I, et al. Nucleic Acids Res. 2003 Apr 1;31(7):e36. doi: 10.1093/nar/gng036. Nucleic Acids Res. 2003. PMID: 12655024 Free PMC article.

7

The role of certain Post classes in Boolean network models of genetic networks.

Shmulevich I, Lähdesmäki H, Dougherty ER, Astola J, Zhang W. Shmulevich I, et al. Proc Natl Acad Sci U S A. 2003 Sep 16;100(19):10734-9. doi: 10.1073/pnas.1534782100. Epub 2003 Sep 8. Proc Natl Acad Sci U S A. 2003. PMID: 12963822 Free PMC article.

8

Growing genetic regulatory networks from seed genes.

Hashimoto RF, Kim S, Shmulevich I, Zhang W, Bittner ML, Dougherty ER. Hashimoto RF, et al. Among authors: shmulevich i. Bioinformatics. 2004 May 22;20(8):1241-7. doi: 10.1093/bioinformatics/bth074. Epub 2004 Feb 10. Bioinformatics. 2004. PMID: 14871865

9

Distinguishing key biological pathways between primary breast cancers and their lymph node metastases by gene function-based clustering analysis.

Lähdesmäki H, Hao X, Sun B, Hu L, Yli-Harja O, Shmulevich I, Zhang W. Lähdesmäki H, et al. Among authors: shmulevich i. Int J Oncol. 2004 Jun;24(6):1589-96. Int J Oncol. 2004. PMID: 15138604

10

Insulin-like growth factor binding protein 2 promotes ovarian cancer cell invasion.

Lee EJ, Mircean C, Shmulevich I, Wang H, Liu J, Niemistö A, Kavanagh JJ, Lee JH, Zhang W. Lee EJ, et al. Among authors: shmulevich i. Mol Cancer. 2005 Feb 2;4(1):7. doi: 10.1186/1476-4598-4-7. Mol Cancer. 2005. PMID: 15686601 Free PMC article.

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