Schroeder SG - Search Results

1

Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm.

Zhou Y, Connor EE, Bickhart DM, Li C, Baldwin RL, Schroeder SG, Rosen BD, Yang L, Van Tassell CP, Liu GE. Zhou Y, et al. Among authors: schroeder sg. Gigascience. 2018 May 1;7(5):giy039. doi: 10.1093/gigascience/giy039. Gigascience. 2018. PMID: 29635292 Free PMC article.

2

Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression.

Zhou Y, Xu L, Bickhart DM, Abdel Hay EH, Schroeder SG, Connor EE, Alexander LJ, Sonstegard TS, Van Tassell CP, Chen H, Liu GE. Zhou Y, et al. Among authors: schroeder sg. BMC Genomics. 2016 Oct 6;17(1):779. doi: 10.1186/s12864-016-3116-1. BMC Genomics. 2016. PMID: 27716143 Free PMC article.

3

Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits.

Fang L, Zhou Y, Liu S, Jiang J, Bickhart DM, Null DJ, Li B, Schroeder SG, Rosen BD, Cole JB, Van Tassell CP, Ma L, Liu GE. Fang L, et al. Among authors: schroeder sg. Epigenetics. 2019 Mar;14(3):260-276. doi: 10.1080/15592294.2019.1582217. Epub 2019 Mar 24. Epigenetics. 2019. PMID: 30810461 Free PMC article.

4

De novo assembly of the cattle reference genome with single-molecule sequencing.

Rosen BD, Bickhart DM, Schnabel RD, Koren S, Elsik CG, Tseng E, Rowan TN, Low WY, Zimin A, Couldrey C, Hall R, Li W, Rhie A, Ghurye J, McKay SD, Thibaud-Nissen F, Hoffman J, Murdoch BM, Snelling WM, McDaneld TG, Hammond JA, Schwartz JC, Nandolo W, Hagen DE, Dreischer C, Schultheiss SJ, Schroeder SG, Phillippy AM, Cole JB, Van Tassell CP, Liu G, Smith TPL, Medrano JF. Rosen BD, et al. Among authors: schroeder sg. Gigascience. 2020 Mar 1;9(3):giaa021. doi: 10.1093/gigascience/giaa021. Gigascience. 2020. PMID: 32191811 Free PMC article.

5

Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns.

Zhou Y, Liu S, Hu Y, Fang L, Gao Y, Xia H, Schroeder SG, Rosen BD, Connor EE, Li CJ, Baldwin RL, Cole JB, Van Tassell CP, Yang L, Ma L, Liu GE. Zhou Y, et al. Among authors: schroeder sg. BMC Biol. 2020 Jul 6;18(1):85. doi: 10.1186/s12915-020-00793-5. BMC Biol. 2020. PMID: 32631327 Free PMC article.

6

Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

Xu L, Bickhart DM, Cole JB, Schroeder SG, Song J, Tassell CP, Sonstegard TS, Liu GE. Xu L, et al. Among authors: schroeder sg. Mol Biol Evol. 2015 Mar;32(3):711-25. doi: 10.1093/molbev/msu333. Epub 2014 Nov 26. Mol Biol Evol. 2015. PMID: 25431480 Free PMC article.

7

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle.

Bickhart DM, Xu L, Hutchison JL, Cole JB, Null DJ, Schroeder SG, Song J, Garcia JF, Sonstegard TS, Van Tassell CP, Schnabel RD, Taylor JF, Lewin HA, Liu GE. Bickhart DM, et al. Among authors: schroeder sg. DNA Res. 2016 Jun;23(3):253-62. doi: 10.1093/dnares/dsw013. Epub 2016 Apr 15. DNA Res. 2016. PMID: 27085184 Free PMC article.

8

Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus.

Zhou Y, Utsunomiya YT, Xu L, Hay el HA, Bickhart DM, Alexandre PA, Rosen BD, Schroeder SG, Carvalheiro R, de Rezende Neves HH, Sonstegard TS, Van Tassell CP, Ferraz JB, Fukumasu H, Garcia JF, Liu GE. Zhou Y, et al. Among authors: schroeder sg. BMC Genomics. 2016 Jun 1;17:419. doi: 10.1186/s12864-016-2461-4. BMC Genomics. 2016. PMID: 27245577 Free PMC article.

9

Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle.

Zhou Y, Connor EE, Wiggans GR, Lu Y, Tempelman RJ, Schroeder SG, Chen H, Liu GE. Zhou Y, et al. Among authors: schroeder sg. BMC Genomics. 2018 May 2;19(1):314. doi: 10.1186/s12864-018-4699-5. BMC Genomics. 2018. PMID: 29716533 Free PMC article.

10

Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo ( Bubalus bubalis ).

Liu S, Kang X, Catacchio CR, Liu M, Fang L, Schroeder SG, Li W, Rosen BD, Iamartino D, Iannuzzi L, Sonstegard TS, Van Tassell CP, Ventura M, Low WY, Williams JL, Bickhart DM, Liu GE. Liu S, et al. Among authors: schroeder sg. Funct Integr Genomics. 2019 May;19(3):409-419. doi: 10.1007/s10142-019-00657-4. Epub 2019 Feb 7. Funct Integr Genomics. 2019. PMID: 30734132

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