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Page 1
Earth BioGenome Project: Sequencing life for the future of life.
Lewin HA, Robinson GE, Kress WJ, Baker WJ, Coddington J, Crandall KA, Durbin R, Edwards SV, Forest F, Gilbert MTP, Goldstein MM, Grigoriev IV, Hackett KJ, Haussler D, Jarvis ED, Johnson WE, Patrinos A, Richards S, Castilla-Rubio JC, van Sluys MA, Soltis PS, Xu X, Yang H, Zhang G. Lewin HA, et al. Among authors: van sluys ma. Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4325-4333. doi: 10.1073/pnas.1720115115. Proc Natl Acad Sci U S A. 2018. PMID: 29686065 Free PMC article.
Transmission of Xanthomonas albilineans by the spittlebug, Mahanarva fimbriolata (Hemiptera: Cercopidae), in Brazil: first report of an insect vector for the causal agent of sugarcane leaf scald.
Bini AP, Serra MCD, Pastore IF, Brondi CV, Camargo LEA, Monteiro-Vitorello CB, van Sluys MA, Rossi GD, Creste S. Bini AP, et al. Among authors: van sluys ma. J Insect Sci. 2023 Nov 1;23(6):28. doi: 10.1093/jisesa/iead116. J Insect Sci. 2023. PMID: 38109489 Free PMC article.
Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.
Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R. Zhang J, et al. Among authors: ma p, ma q, van sluys ma, ma t, ma x, ma y. Nat Genet. 2018 Nov;50(11):1565-1573. doi: 10.1038/s41588-018-0237-2. Epub 2018 Oct 8. Nat Genet. 2018. PMID: 30297971
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.
da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP. da Silva AC, et al. Among authors: van sluys ma. Nature. 2002 May 23;417(6887):459-63. doi: 10.1038/417459a. Nature. 2002. PMID: 12024217
Evaluation of monocot and eudicot divergence using the sugarcane transcriptome.
Vincentz M, Cara FA, Okura VK, da Silva FR, Pedrosa GL, Hemerly AS, Capella AN, Marins M, Ferreira PC, França SC, Grivet L, Vettore AL, Kemper EL, Burnquist WL, Targon ML, Siqueira WJ, Kuramae EE, Marino CL, Camargo LE, Carrer H, Coutinho LL, Furlan LR, Lemos MV, Nunes LR, Gomes SL, Santelli RV, Goldman MH, Bacci M Jr, Giglioti EA, Thiemann OH, Silva FH, Van Sluys MA, Nobrega FG, Arruda P, Menck CF. Vincentz M, et al. Among authors: van sluys ma. Plant Physiol. 2004 Mar;134(3):951-9. doi: 10.1104/pp.103.033878. Plant Physiol. 2004. PMID: 15020759 Free PMC article.
Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes.
Wang J, Roe B, Macmil S, Yu Q, Murray JE, Tang H, Chen C, Najar F, Wiley G, Bowers J, Van Sluys MA, Rokhsar DS, Hudson ME, Moose SP, Paterson AH, Ming R. Wang J, et al. Among authors: van sluys ma. BMC Genomics. 2010 Apr 23;11:261. doi: 10.1186/1471-2164-11-261. BMC Genomics. 2010. PMID: 20416060 Free PMC article.
Diversification of hAT transposase paralogues in the sugarcane genome.
de Jesus EM, Cruz EA, Cruz GM, Van Sluys MA. de Jesus EM, et al. Among authors: van sluys ma. Mol Genet Genomics. 2012 Mar;287(3):205-19. doi: 10.1007/s00438-011-0670-8. Epub 2012 Jan 7. Mol Genet Genomics. 2012. PMID: 22228195 Free PMC article.
SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids.
Garcia AA, Mollinari M, Marconi TG, Serang OR, Silva RR, Vieira ML, Vicentini R, Costa EA, Mancini MC, Garcia MO, Pastina MM, Gazaffi R, Martins ER, Dahmer N, Sforça DA, Silva CB, Bundock P, Henry RJ, Souza GM, van Sluys MA, Landell MG, Carneiro MS, Vincentz MA, Pinto LR, Vencovsky R, Souza AP. Garcia AA, et al. Among authors: van sluys ma. Sci Rep. 2013 Dec 2;3:3399. doi: 10.1038/srep03399. Sci Rep. 2013. PMID: 24292365 Free PMC article.
Building the sugarcane genome for biotechnology and identifying evolutionary trends.
de Setta N, Monteiro-Vitorello CB, Metcalfe CJ, Cruz GM, Del Bem LE, Vicentini R, Nogueira FT, Campos RA, Nunes SL, Turrini PC, Vieira AP, Ochoa Cruz EA, Corrêa TC, Hotta CT, de Mello Varani A, Vautrin S, da Trindade AS, de Mendonça Vilela M, Lembke CG, Sato PM, de Andrade RF, Nishiyama MY Jr, Cardoso-Silva CB, Scortecci KC, Garcia AA, Carneiro MS, Kim C, Paterson AH, Bergès H, D'Hont A, de Souza AP, Souza GM, Vincentz M, Kitajima JP, Van Sluys MA. de Setta N, et al. Among authors: van sluys ma. BMC Genomics. 2014 Jun 30;15(1):540. doi: 10.1186/1471-2164-15-540. BMC Genomics. 2014. PMID: 24984568 Free PMC article.
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