Okuda A - Search Results

1

A CRISPR knockout screen identifies SETDB1-target retroelement silencing factors in embryonic stem cells.

Fukuda K, Okuda A, Yusa K, Shinkai Y. Fukuda K, et al. Among authors: okuda a. Genome Res. 2018 Jun;28(6):846-858. doi: 10.1101/gr.227280.117. Epub 2018 May 4. Genome Res. 2018. PMID: 29728365 Free PMC article.

2

DNMTs and SETDB1 function as co-repressors in MAX-mediated repression of germ cell-related genes in mouse embryonic stem cells.

Tatsumi D, Hayashi Y, Endo M, Kobayashi H, Yoshioka T, Kiso K, Kanno S, Nakai Y, Maeda I, Mochizuki K, Tachibana M, Koseki H, Okuda A, Yasui A, Kono T, Matsui Y. Tatsumi D, et al. Among authors: okuda a. PLoS One. 2018 Nov 7;13(11):e0205969. doi: 10.1371/journal.pone.0205969. eCollection 2018. PLoS One. 2018. PMID: 30403691 Free PMC article.

3

Two DNA binding domains of MGA act in combination to suppress ectopic activation of meiosis-related genes in mouse embryonic stem cells.

Uranishi K, Hirasaki M, Kitamura Y, Mizuno Y, Nishimoto M, Suzuki A, Okuda A. Uranishi K, et al. Among authors: okuda a. Stem Cells. 2021 Nov;39(11):1435-1446. doi: 10.1002/stem.3433. Epub 2021 Jul 14. Stem Cells. 2021. PMID: 34224650

4

Repression of germline genes by PRC1.6 and SETDB1 in the early embryo precedes DNA methylation-mediated silencing.

Mochizuki K, Sharif J, Shirane K, Uranishi K, Bogutz AB, Janssen SM, Suzuki A, Okuda A, Koseki H, Lorincz MC. Mochizuki K, et al. Among authors: okuda a. Nat Commun. 2021 Dec 2;12(1):7020. doi: 10.1038/s41467-021-27345-x. Nat Commun. 2021. PMID: 34857746 Free PMC article.

5

Identification of an enhancer that controls up-regulation of fibronectin during differentiation of embryonic stem cells into extraembryonic endoderm.

Shirai T, Miyagi S, Horiuchi D, Okuda-Katayanagi T, Nishimoto M, Muramatsu M, Sakamoto Y, Nagata M, Hagiwara K, Okuda A. Shirai T, et al. Among authors: okuda katayanagi t, okuda a. J Biol Chem. 2005 Feb 25;280(8):7244-52. doi: 10.1074/jbc.M410731200. Epub 2004 Dec 7. J Biol Chem. 2005. PMID: 15590650 Free article.

6

Putative "stemness" gene jam-B is not required for maintenance of stem cell state in embryonic, neural, or hematopoietic stem cells.

Sakaguchi T, Nishimoto M, Miyagi S, Iwama A, Morita Y, Iwamori N, Nakauchi H, Kiyonari H, Muramatsu M, Okuda A. Sakaguchi T, et al. Among authors: okuda a. Mol Cell Biol. 2006 Sep;26(17):6557-70. doi: 10.1128/MCB.00729-06. Mol Cell Biol. 2006. PMID: 16914739 Free PMC article.

7

Identification of an ES cell pluripotent state-specific DUSP6 enhancer.

Zhang J, Nomura J, Maruyama M, Nishimoto M, Muramatsu M, Okuda A. Zhang J, et al. Among authors: okuda a. Biochem Biophys Res Commun. 2009 Jan 9;378(2):319-23. doi: 10.1016/j.bbrc.2008.11.068. Epub 2008 Nov 24. Biochem Biophys Res Commun. 2009. PMID: 19032937

8

Integration of exogenous DNA into mouse embryonic stem cell chromosomes shows preference into genes and frequent modification at junctions.

Suzuki K, Ohbayashi F, Nikaido I, Okuda A, Takaki H, Okazaki Y, Mitani K. Suzuki K, et al. Among authors: okuda a. Chromosome Res. 2010 Feb;18(2):191-201. doi: 10.1007/s10577-010-9111-5. Epub 2010 Feb 23. Chromosome Res. 2010. PMID: 20177773

9

Identification of Ccr4-not complex components as regulators of transition from partial to genuine induced pluripotent stem cells.

Kamon M, Katano M, Hiraki-Kamon K, Hishida T, Nakachi Y, Mizuno Y, Okazaki Y, Suzuki A, Hirasaki M, Ueda A, Nishimoto M, Kato H, Okuda A. Kamon M, et al. Among authors: okuda a. Stem Cells Dev. 2014 Sep 15;23(18):2170-9. doi: 10.1089/scd.2013.0326. Epub 2013 Dec 9. Stem Cells Dev. 2014. PMID: 24200330 Free PMC article.

10

Dzip3 regulates developmental genes in mouse embryonic stem cells by reorganizing 3D chromatin conformation.

Inoue D, Aihara H, Sato T, Mizusaki H, Doiguchi M, Higashi M, Imamura Y, Yoneda M, Miyanishi T, Fujii S, Okuda A, Nakagawa T, Ito T. Inoue D, et al. Among authors: okuda a. Sci Rep. 2015 Nov 16;5:16567. doi: 10.1038/srep16567. Sci Rep. 2015. PMID: 26568260 Free PMC article.

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