Kennedy SD - Search Results

1

Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations.

Bottaro S, Bussi G, Kennedy SD, Turner DH, Lindorff-Larsen K. Bottaro S, et al. Among authors: kennedy sd. Sci Adv. 2018 May 18;4(5):eaar8521. doi: 10.1126/sciadv.aar8521. eCollection 2018 May. Sci Adv. 2018. PMID: 29795785 Free PMC article.

2

Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron.

Schroeder SJ, Fountain MA, Kennedy SD, Lukavsky PJ, Puglisi JD, Krugh TR, Turner DH. Schroeder SJ, et al. Among authors: kennedy sd. Biochemistry. 2003 Dec 9;42(48):14184-96. doi: 10.1021/bi0301587. Biochemistry. 2003. PMID: 14640686

3

Structural features and thermodynamics of the J4/5 loop from the Candida albicans and Candida dubliniensis group I introns.

Znosko BM, Kennedy SD, Wille PC, Krugh TR, Turner DH. Znosko BM, et al. Among authors: kennedy sd. Biochemistry. 2004 Dec 21;43(50):15822-37. doi: 10.1021/bi049256y. Biochemistry. 2004. PMID: 15595837

4

Solution structure of an RNA internal loop with three consecutive sheared GA pairs.

Chen G, Znosko BM, Kennedy SD, Krugh TR, Turner DH. Chen G, et al. Among authors: kennedy sd. Biochemistry. 2005 Mar 1;44(8):2845-56. doi: 10.1021/bi048079y. Biochemistry. 2005. PMID: 15723528

5

An alternating sheared AA pair and elements of stability for a single sheared purine-purine pair flanked by sheared GA pairs in RNA.

Chen G, Kennedy SD, Qiao J, Krugh TR, Turner DH. Chen G, et al. Among authors: kennedy sd. Biochemistry. 2006 Jun 6;45(22):6889-903. doi: 10.1021/bi0524464. Biochemistry. 2006. PMID: 16734425 Free PMC article.

6

The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits.

Shankar N, Kennedy SD, Chen G, Krugh TR, Turner DH. Shankar N, et al. Among authors: kennedy sd. Biochemistry. 2006 Oct 3;45(39):11776-89. doi: 10.1021/bi0605787. Biochemistry. 2006. PMID: 17002278 Free PMC article.

7

NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs.

Tolbert BS, Kennedy SD, Schroeder SJ, Krugh TR, Turner DH. Tolbert BS, et al. Among authors: kennedy sd. Biochemistry. 2007 Feb 13;46(6):1511-22. doi: 10.1021/bi061350m. Epub 2007 Jan 20. Biochemistry. 2007. PMID: 17279616 Free PMC article.

8

Stacking effects on local structure in RNA: changes in the structure of tandem GA pairs when flanking GC pairs are replaced by isoG-isoC pairs.

Chen G, Kierzek R, Yildirim I, Krugh TR, Turner DH, Kennedy SD. Chen G, et al. Among authors: kennedy sd. J Phys Chem B. 2007 Jun 21;111(24):6718-27. doi: 10.1021/jp068732m. Epub 2007 Apr 6. J Phys Chem B. 2007. PMID: 17411085 Free PMC article.

9

NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA.

Shankar N, Xia T, Kennedy SD, Krugh TR, Mathews DH, Turner DH. Shankar N, et al. Among authors: kennedy sd. Biochemistry. 2007 Nov 6;46(44):12665-78. doi: 10.1021/bi700802s. Epub 2007 Oct 11. Biochemistry. 2007. PMID: 17929882

10

NMR-assisted prediction of RNA secondary structure: identification of a probable pseudoknot in the coding region of an R2 retrotransposon.

Hart JM, Kennedy SD, Mathews DH, Turner DH. Hart JM, et al. Among authors: kennedy sd. J Am Chem Soc. 2008 Aug 6;130(31):10233-9. doi: 10.1021/ja8026696. Epub 2008 Jul 10. J Am Chem Soc. 2008. PMID: 18613678 Free PMC article.

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