Ma Q - Search Results

1

RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis.

Chen X, Ma A, McDermaid A, Zhang H, Liu C, Cao H, Ma Q. Chen X, et al. Among authors: ma a, ma q. Genes (Basel). 2018 May 30;9(6):278. doi: 10.3390/genes9060278. Genes (Basel). 2018. PMID: 29849014 Free PMC article.

2

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

Mao X, Ma Q, Zhou C, Chen X, Zhang H, Yang J, Mao F, Lai W, Xu Y. Mao X, et al. Among authors: ma q. Nucleic Acids Res. 2014 Jan;42(Database issue):D654-9. doi: 10.1093/nar/gkt1048. Epub 2013 Nov 7. Nucleic Acids Res. 2014. PMID: 24214966 Free PMC article.

3

DMINDA: an integrated web server for DNA motif identification and analyses.

Ma Q, Zhang H, Mao X, Zhou C, Liu B, Chen X, Xu Y. Ma Q, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W12-9. doi: 10.1093/nar/gku315. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753419 Free PMC article.

4

Understanding the commonalities and differences in genomic organizations across closely related bacteria from an energy perspective.

Ma Q, Chen X, Liu C, Mao X, Zhang H, Ji F, Wu C, Xu Y. Ma Q, et al. Sci China Life Sci. 2014 Nov;57(11):1121-30. doi: 10.1007/s11427-014-4734-y. Epub 2014 Sep 18. Sci China Life Sci. 2014. PMID: 25234108

5

Revisiting operons: an analysis of the landscape of transcriptional units in E. coli.

Mao X, Ma Q, Liu B, Chen X, Zhang H, Xu Y. Mao X, et al. Among authors: ma q. BMC Bioinformatics. 2015 Nov 4;16:356. doi: 10.1186/s12859-015-0805-8. BMC Bioinformatics. 2015. PMID: 26538447 Free PMC article.

6

Bacterial regulon modeling and prediction based on systematic cis regulatory motif analyses.

Liu B, Zhou C, Li G, Zhang H, Zeng E, Liu Q, Ma Q. Liu B, et al. Among authors: ma q. Sci Rep. 2016 Mar 15;6:23030. doi: 10.1038/srep23030. Sci Rep. 2016. PMID: 26975728 Free PMC article.

7

An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes.

Liu B, Zhang H, Zhou C, Li G, Fennell A, Wang G, Kang Y, Liu Q, Ma Q. Liu B, et al. Among authors: ma q. BMC Genomics. 2016 Aug 9;17:578. doi: 10.1186/s12864-016-2982-x. BMC Genomics. 2016. PMID: 27507169 Free PMC article.

8

SeqTU: A Web Server for Identification of Bacterial Transcription Units.

Chen X, Chou WC, Ma Q, Xu Y. Chen X, et al. Among authors: ma q. Sci Rep. 2017 Mar 7;7:43925. doi: 10.1038/srep43925. Sci Rep. 2017. PMID: 28266571 Free PMC article.

9

Systems-level understanding of ethanol-induced stresses and adaptation in E. coli.

Cao H, Wei D, Yang Y, Shang Y, Li G, Zhou Y, Ma Q, Xu Y. Cao H, et al. Among authors: ma q. Sci Rep. 2017 Mar 16;7:44150. doi: 10.1038/srep44150. Sci Rep. 2017. PMID: 28300180 Free PMC article.

10

An algorithmic perspective of de novo cis-regulatory motif finding based on ChIP-seq data.

Liu B, Yang J, Li Y, McDermaid A, Ma Q. Liu B, et al. Among authors: ma q. Brief Bioinform. 2018 Sep 28;19(5):1069-1081. doi: 10.1093/bib/bbx026. Brief Bioinform. 2018. PMID: 28334268 Review.

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