Akutsu T - Search Results

1

Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome.

Li F, Li C, Marquez-Lago TT, Leier A, Akutsu T, Purcell AW, Ian Smith A, Lithgow T, Daly RJ, Song J, Chou KC. Li F, et al. Among authors: akutsu t. Bioinformatics. 2018 Dec 15;34(24):4223-4231. doi: 10.1093/bioinformatics/bty522. Bioinformatics. 2018. PMID: 29947803 Free PMC article.

2

Inferring strengths of protein-protein interactions from experimental data using linear programming.

Hayashida M, Ueda N, Akutsu T. Hayashida M, et al. Among authors: akutsu t. Bioinformatics. 2003 Oct;19 Suppl 2:ii58-65. doi: 10.1093/bioinformatics/btg1061. Bioinformatics. 2003. PMID: 14534173

3

Protein homology detection using string alignment kernels.

Saigo H, Vert JP, Ueda N, Akutsu T. Saigo H, et al. Among authors: akutsu t. Bioinformatics. 2004 Jul 22;20(11):1682-9. doi: 10.1093/bioinformatics/bth141. Epub 2004 Feb 26. Bioinformatics. 2004. PMID: 14988126

4

A score matrix to reveal the hidden links in glycans.

Aoki KF, Mamitsuka H, Akutsu T, Kanehisa M. Aoki KF, et al. Among authors: akutsu t. Bioinformatics. 2005 Apr 15;21(8):1457-63. doi: 10.1093/bioinformatics/bti193. Epub 2004 Dec 7. Bioinformatics. 2005. PMID: 15585530

5

Identification of metabolic units induced by environmental signals.

Nacher JC, Schwartz JM, Kanehisa M, Akutsu T. Nacher JC, et al. Among authors: akutsu t. Bioinformatics. 2006 Jul 15;22(14):e375-83. doi: 10.1093/bioinformatics/btl202. Bioinformatics. 2006. PMID: 16873496

6

HSEpred: predict half-sphere exposure from protein sequences.

Song J, Tan H, Takemoto K, Akutsu T. Song J, et al. Among authors: akutsu t. Bioinformatics. 2008 Jul 1;24(13):1489-97. doi: 10.1093/bioinformatics/btn222. Epub 2008 May 8. Bioinformatics. 2008. PMID: 18467349

7

Prodepth: predict residue depth by support vector regression approach from protein sequences only.

Song J, Tan H, Mahmood K, Law RH, Buckle AM, Webb GI, Akutsu T, Whisstock JC. Song J, et al. Among authors: akutsu t. PLoS One. 2009 Sep 17;4(9):e7072. doi: 10.1371/journal.pone.0007072. PLoS One. 2009. PMID: 19759917 Free PMC article.

8

Cascleave: towards more accurate prediction of caspase substrate cleavage sites.

Song J, Tan H, Shen H, Mahmood K, Boyd SE, Webb GI, Akutsu T, Whisstock JC. Song J, et al. Among authors: akutsu t. Bioinformatics. 2010 Mar 15;26(6):752-60. doi: 10.1093/bioinformatics/btq043. Epub 2010 Feb 3. Bioinformatics. 2010. PMID: 20130033

9

RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming.

Kato Y, Sato K, Hamada M, Watanabe Y, Asai K, Akutsu T. Kato Y, et al. Among authors: akutsu t. Bioinformatics. 2010 Sep 15;26(18):i460-6. doi: 10.1093/bioinformatics/btq372. Bioinformatics. 2010. PMID: 20823308 Free PMC article.

10

Bioinformatic approaches for predicting substrates of proteases.

Song J, Tan H, Boyd SE, Shen H, Mahmood K, Webb GI, Akutsu T, Whisstock JC, Pike RN. Song J, et al. Among authors: akutsu t. J Bioinform Comput Biol. 2011 Feb;9(1):149-78. doi: 10.1142/s0219720011005288. J Bioinform Comput Biol. 2011. PMID: 21328711 Review.

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