Hopf TA - Search Results

1

A Systematic p53 Mutation Library Links Differential Functional Impact to Cancer Mutation Pattern and Evolutionary Conservation.

Kotler E, Shani O, Goldfeld G, Lotan-Pompan M, Tarcic O, Gershoni A, Hopf TA, Marks DS, Oren M, Segal E. Kotler E, et al. Among authors: hopf ta. Mol Cell. 2018 Jul 5;71(1):178-190.e8. doi: 10.1016/j.molcel.2018.06.012. Mol Cell. 2018. PMID: 29979965 Free article.

2

Protein 3D structure computed from evolutionary sequence variation.

Marks DS, Colwell LJ, Sheridan R, Hopf TA, Pagnani A, Zecchina R, Sander C. Marks DS, et al. Among authors: hopf ta. PLoS One. 2011;6(12):e28766. doi: 10.1371/journal.pone.0028766. Epub 2011 Dec 7. PLoS One. 2011. PMID: 22163331 Free PMC article.

3

Three-dimensional structures of membrane proteins from genomic sequencing.

Hopf TA, Colwell LJ, Sheridan R, Rost B, Sander C, Marks DS. Hopf TA, et al. Cell. 2012 Jun 22;149(7):1607-21. doi: 10.1016/j.cell.2012.04.012. Epub 2012 May 10. Cell. 2012. PMID: 22579045 Free PMC article.

4

Protein structure prediction from sequence variation.

Marks DS, Hopf TA, Sander C. Marks DS, et al. Among authors: hopf ta. Nat Biotechnol. 2012 Nov;30(11):1072-80. doi: 10.1038/nbt.2419. Nat Biotechnol. 2012. PMID: 23138306 Free PMC article.

5

FreeContact: fast and free software for protein contact prediction from residue co-evolution.

Kaján L, Hopf TA, Kalaš M, Marks DS, Rost B. Kaján L, et al. Among authors: hopf ta. BMC Bioinformatics. 2014 Mar 26;15:85. doi: 10.1186/1471-2105-15-85. BMC Bioinformatics. 2014. PMID: 24669753 Free PMC article.

6

Sequence co-evolution gives 3D contacts and structures of protein complexes.

Hopf TA, Schärfe CP, Rodrigues JP, Green AG, Kohlbacher O, Sander C, Bonvin AM, Marks DS. Hopf TA, et al. Elife. 2014 Sep 25;3:e03430. doi: 10.7554/eLife.03430. Elife. 2014. PMID: 25255213 Free PMC article.

7

Amino acid coevolution reveals three-dimensional structure and functional domains of insect odorant receptors.

Hopf TA, Morinaga S, Ihara S, Touhara K, Marks DS, Benton R. Hopf TA, et al. Nat Commun. 2015 Jan 13;6:6077. doi: 10.1038/ncomms7077. Nat Commun. 2015. PMID: 25584517 Free PMC article.

8

Protein structure determination by combining sparse NMR data with evolutionary couplings.

Tang Y, Huang YJ, Hopf TA, Sander C, Marks DS, Montelione GT. Tang Y, et al. Among authors: hopf ta. Nat Methods. 2015 Aug;12(8):751-4. doi: 10.1038/nmeth.3455. Epub 2015 Jun 29. Nat Methods. 2015. PMID: 26121406 Free PMC article.

9

Structured States of Disordered Proteins from Genomic Sequences.

Toth-Petroczy A, Palmedo P, Ingraham J, Hopf TA, Berger B, Sander C, Marks DS. Toth-Petroczy A, et al. Among authors: hopf ta. Cell. 2016 Sep 22;167(1):158-170.e12. doi: 10.1016/j.cell.2016.09.010. Cell. 2016. PMID: 27662088 Free PMC article.

10

Mutation effects predicted from sequence co-variation.

Hopf TA, Ingraham JB, Poelwijk FJ, Schärfe CP, Springer M, Sander C, Marks DS. Hopf TA, et al. Nat Biotechnol. 2017 Feb;35(2):128-135. doi: 10.1038/nbt.3769. Epub 2017 Jan 16. Nat Biotechnol. 2017. PMID: 28092658 Free PMC article.

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