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Identifying bacterial genes and endosymbiont DNA with Glimmer.
Delcher AL, Bratke KA, Powers EC, Salzberg SL. Delcher AL, et al. Among authors: salzberg sl. Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19. Bioinformatics. 2007. PMID: 17237039 Free PMC article.
TopHat: discovering splice junctions with RNA-Seq.
Trapnell C, Pachter L, Salzberg SL. Trapnell C, et al. Among authors: salzberg sl. Bioinformatics. 2009 May 1;25(9):1105-11. doi: 10.1093/bioinformatics/btp120. Epub 2009 Mar 16. Bioinformatics. 2009. PMID: 19289445 Free PMC article.
Mugsy: fast multiple alignment of closely related whole genomes.
Angiuoli SV, Salzberg SL. Angiuoli SV, et al. Among authors: salzberg sl. Bioinformatics. 2011 Feb 1;27(3):334-42. doi: 10.1093/bioinformatics/btq665. Epub 2010 Dec 9. Bioinformatics. 2011. PMID: 21148543 Free PMC article.
GAGE-B: an evaluation of genome assemblers for bacterial organisms.
Magoc T, Pabinger S, Canzar S, Liu X, Su Q, Puiu D, Tallon LJ, Salzberg SL. Magoc T, et al. Among authors: salzberg sl. Bioinformatics. 2013 Jul 15;29(14):1718-25. doi: 10.1093/bioinformatics/btt273. Epub 2013 May 10. Bioinformatics. 2013. PMID: 23665771 Free PMC article.
The MaSuRCA genome assembler.
Zimin AV, Marçais G, Puiu D, Roberts M, Salzberg SL, Yorke JA. Zimin AV, et al. Among authors: salzberg sl. Bioinformatics. 2013 Nov 1;29(21):2669-77. doi: 10.1093/bioinformatics/btt476. Epub 2013 Aug 29. Bioinformatics. 2013. PMID: 23990416 Free PMC article.
400 results