Chuang JH - Search Results

1

Distribution-based measures of tumor heterogeneity are sensitive to mutation calling and lack strong clinical predictive power.

Noorbakhsh J, Kim H, Namburi S, Chuang JH. Noorbakhsh J, et al. Among authors: chuang jh. Sci Rep. 2018 Jul 30;8(1):11445. doi: 10.1038/s41598-018-29154-7. Sci Rep. 2018. PMID: 30061557 Free PMC article.

2

Functional chromatin features are associated with structural mutations in cancer.

Grzeda KR, Royer-Bertrand B, Inaki K, Kim H, Hillmer AM, Liu ET, Chuang JH. Grzeda KR, et al. Among authors: chuang jh. BMC Genomics. 2014 Nov 23;15(1):1013. doi: 10.1186/1471-2164-15-1013. BMC Genomics. 2014. PMID: 25417144 Free PMC article.

3

Loss of tumor suppressive microRNA-31 enhances TRADD/NF-κB signaling in glioblastoma.

Rajbhandari R, McFarland BC, Patel A, Gerigk M, Gray GK, Fehling SC, Bredel M, Berbari NF, Kim H, Marks MP, Meares GP, Sinha T, Chuang J, Benveniste EN, Nozell SE. Rajbhandari R, et al. Oncotarget. 2015 Jul 10;6(19):17805-16. doi: 10.18632/oncotarget.4596. Oncotarget. 2015. PMID: 26164206 Free PMC article.

4

The tandem duplicator phenotype as a distinct genomic configuration in cancer.

Menghi F, Inaki K, Woo X, Kumar PA, Grzeda KR, Malhotra A, Yadav V, Kim H, Marquez EJ, Ucar D, Shreckengast PT, Wagner JP, MacIntyre G, Murthy Karuturi KR, Scully R, Keck J, Chuang JH, Liu ET. Menghi F, et al. Among authors: chuang jh. Proc Natl Acad Sci U S A. 2016 Apr 26;113(17):E2373-82. doi: 10.1073/pnas.1520010113. Epub 2016 Apr 7. Proc Natl Acad Sci U S A. 2016. PMID: 27071093 Free PMC article.

5

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens.

Bais P, Namburi S, Gatti DM, Zhang X, Chuang JH. Bais P, et al. Among authors: chuang jh. Bioinformatics. 2017 Oct 1;33(19):3110-3112. doi: 10.1093/bioinformatics/btx375. Bioinformatics. 2017. PMID: 28605406 Free PMC article.

6

Uncertainties in tumor allele frequencies limit power to infer evolutionary pressures.

Noorbakhsh J, Chuang JH. Noorbakhsh J, et al. Among authors: chuang jh. Nat Genet. 2017 Aug 30;49(9):1288-1289. doi: 10.1038/ng.3876. Nat Genet. 2017. PMID: 28854177 Free PMC article. No abstract available.

7

Alterations in the Rho pathway contribute to Epstein-Barr virus-induced lymphomagenesis in immunosuppressed environments.

Cho SY, Sung CO, Chae J, Lee J, Na D, Kang W, Kang J, Min S, Lee A, Kwak E, Kim J, Choi B, Kim H, Chuang JH, Pak HK, Park CS, Park S, Ko YH, Lee D, Roh J, Cho MS, Park S, Ju YS, Suh YS, Kong SH, Lee HJ, Keck J, Banchereau J, Liu ET, Kim WH, Park H, Yang HK, Kim JI, Lee C. Cho SY, et al. Among authors: chuang jh. Blood. 2018 Apr 26;131(17):1931-1941. doi: 10.1182/blood-2017-07-797209. Epub 2018 Feb 23. Blood. 2018. PMID: 29475961 Free PMC article.

8

Mutations in DNA repair genes are associated with increased neo-antigen load and activated T cell infiltration in lung adenocarcinoma.

Chae YK, Anker JF, Bais P, Namburi S, Giles FJ, Chuang JH. Chae YK, et al. Among authors: chuang jh. Oncotarget. 2017 Dec 15;9(8):7949-7960. doi: 10.18632/oncotarget.23742. eCollection 2018 Jan 30. Oncotarget. 2017. PMID: 29487705 Free PMC article.

9

Whole-exome sequencing capture kit biases yield false negative mutation calls in TCGA cohorts.

Wang VG, Kim H, Chuang JH. Wang VG, et al. Among authors: chuang jh. PLoS One. 2018 Oct 3;13(10):e0204912. doi: 10.1371/journal.pone.0204912. eCollection 2018. PLoS One. 2018. PMID: 30281678 Free PMC article.

10

High-resolution deconstruction of evolution induced by chemotherapy treatments in breast cancer xenografts.

Kim H, Kumar P, Menghi F, Noorbakhsh J, Cerveira E, Ryan M, Zhu Q, Ananda G, George J, Chen HC, Mockus S, Zhang C, Yang Y, Keck J, Karuturi RKM, Bult CJ, Lee C, Liu ET, Chuang JH. Kim H, et al. Among authors: chuang jh. Sci Rep. 2018 Dec 18;8(1):17937. doi: 10.1038/s41598-018-36184-8. Sci Rep. 2018. PMID: 30560892 Free PMC article.

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