Brown SD - Search Results

1

Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.

Holliday GL, Akiva E, Meng EC, Brown SD, Calhoun S, Pieper U, Sali A, Booker SJ, Babbitt PC. Holliday GL, et al. Among authors: brown sd. Methods Enzymol. 2018;606:1-71. doi: 10.1016/bs.mie.2018.06.004. Epub 2018 Jul 24. Methods Enzymol. 2018. PMID: 30097089 Free PMC article.

2

Inference of functional properties from large-scale analysis of enzyme superfamilies.

Brown SD, Babbitt PC. Brown SD, et al. J Biol Chem. 2012 Jan 2;287(1):35-42. doi: 10.1074/jbc.R111.283408. Epub 2011 Nov 8. J Biol Chem. 2012. PMID: 22069325 Free PMC article. Review.

3

New insights about enzyme evolution from large scale studies of sequence and structure relationships.

Brown SD, Babbitt PC. Brown SD, et al. J Biol Chem. 2014 Oct 31;289(44):30221-30228. doi: 10.1074/jbc.R114.569350. Epub 2014 Sep 10. J Biol Chem. 2014. PMID: 25210038 Free PMC article. Review.

4

Biocuration in the structure-function linkage database: the anatomy of a superfamily.

Holliday GL, Brown SD, Akiva E, Mischel D, Hicks MA, Morris JH, Huang CC, Meng EC, Pegg SC, Ferrin TE, Babbitt PC. Holliday GL, et al. Among authors: brown sd. Database (Oxford). 2017 Jan 1;2017(1):bax006. doi: 10.1093/database/bax006. Database (Oxford). 2017. PMID: 28365730 Free PMC article.

5

A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function.

Holliday GL, Brown SD, Mischel D, Polacco BJ, Babbitt PC. Holliday GL, et al. Among authors: brown sd. Database (Oxford). 2020 Jan 1;2020:baaa034. doi: 10.1093/database/baaa034. Database (Oxford). 2020. PMID: 32449511 Free PMC article.

6

The Structure-Function Linkage Database.

Akiva E, Brown S, Almonacid DE, Barber AE 2nd, Custer AF, Hicks MA, Huang CC, Lauck F, Mashiyama ST, Meng EC, Mischel D, Morris JH, Ojha S, Schnoes AM, Stryke D, Yunes JM, Ferrin TE, Holliday GL, Babbitt PC. Akiva E, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D521-30. doi: 10.1093/nar/gkt1130. Epub 2013 Nov 23. Nucleic Acids Res. 2014. PMID: 24271399 Free PMC article.

7

Using the structure-function linkage database to characterize functional domains in enzymes.

Brown S, Babbitt P. Brown S, et al. Curr Protoc Bioinformatics. 2014 Dec 12;48:2.10.1-2.10.16. doi: 10.1002/0471250953.bi0210s48. Curr Protoc Bioinformatics. 2014. PMID: 25501940 Free PMC article.

8

Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database.

Pegg SC, Brown SD, Ojha S, Seffernick J, Meng EC, Morris JH, Chang PJ, Huang CC, Ferrin TE, Babbitt PC. Pegg SC, et al. Among authors: brown sd. Biochemistry. 2006 Feb 28;45(8):2545-55. doi: 10.1021/bi052101l. Biochemistry. 2006. PMID: 16489747

9

A gold standard set of mechanistically diverse enzyme superfamilies.

Brown SD, Gerlt JA, Seffernick JL, Babbitt PC. Brown SD, et al. Genome Biol. 2006;7(1):R8. doi: 10.1186/gb-2006-7-1-r8. Epub 2006 Jan 31. Genome Biol. 2006. PMID: 16507141 Free PMC article.

10

Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies.

Pieper U, Chiang R, Seffernick JJ, Brown SD, Glasner ME, Kelly L, Eswar N, Sauder JM, Bonanno JB, Swaminathan S, Burley SK, Zheng X, Chance MR, Almo SC, Gerlt JA, Raushel FM, Jacobson MP, Babbitt PC, Sali A. Pieper U, et al. Among authors: brown sd. J Struct Funct Genomics. 2009 Apr;10(2):107-25. doi: 10.1007/s10969-008-9056-5. Epub 2009 Feb 14. J Struct Funct Genomics. 2009. PMID: 19219566 Free PMC article.

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