Jagtap PD - Search Results

1

Bridging the Chromosome-centric and Biology/Disease-driven Human Proteome Projects: Accessible and Automated Tools for Interpreting the Biological and Pathological Impact of Protein Sequence Variants Detected via Proteogenomics.

Sajulga R, Mehta S, Kumar P, Johnson JE, Guerrero CR, Ryan MC, Karchin R, Jagtap PD, Griffin TJ. Sajulga R, et al. Among authors: jagtap pd. J Proteome Res. 2018 Dec 7;17(12):4329-4336. doi: 10.1021/acs.jproteome.8b00404. Epub 2018 Sep 5. J Proteome Res. 2018. PMID: 30130115

2

Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides.

Mahoney DW, Therneau TM, Heppelmann CJ, Higgins L, Benson LM, Zenka RM, Jagtap P, Nelsestuen GL, Bergen HR, Oberg AL. Mahoney DW, et al. J Proteome Res. 2011 Sep 2;10(9):4325-33. doi: 10.1021/pr2001308. Epub 2011 Aug 2. J Proteome Res. 2011. PMID: 21755926 Free PMC article.

3

Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery.

Kooren JA, Rhodus NL, Tang C, Jagtap PD, Horrigan BJ, Griffin TJ. Kooren JA, et al. Among authors: jagtap pd. Clin Proteomics. 2011 Sep 13;8(1):13. doi: 10.1186/1559-0275-8-13. Clin Proteomics. 2011. PMID: 21914210 Free PMC article.

4

Deep metaproteomic analysis of human salivary supernatant.

Jagtap P, McGowan T, Bandhakavi S, Tu ZJ, Seymour S, Griffin TJ, Rudney JD. Jagtap P, et al. Proteomics. 2012 Apr;12(7):992-1001. doi: 10.1002/pmic.201100503. Proteomics. 2012. PMID: 22522805 Free PMC article.

5

Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.

Jagtap P, Bandhakavi S, Higgins L, McGowan T, Sa R, Stone MD, Chilton J, Arriaga EA, Seymour SL, Griffin TJ. Jagtap P, et al. Proteomics. 2012 Jun;12(11):1726-30. doi: 10.1002/pmic.201100097. Proteomics. 2012. PMID: 22623410 Free PMC article.

6

A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies.

Jagtap P, Goslinga J, Kooren JA, McGowan T, Wroblewski MS, Seymour SL, Griffin TJ. Jagtap P, et al. Proteomics. 2013 Apr;13(8):1352-7. doi: 10.1002/pmic.201200352. Epub 2013 Mar 15. Proteomics. 2013. PMID: 23412978 Free PMC article.

7

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations.

Sheynkman GM, Johnson JE, Jagtap PD, Shortreed MR, Onsongo G, Frey BL, Griffin TJ, Smith LM. Sheynkman GM, et al. Among authors: jagtap pd. BMC Genomics. 2014 Aug 22;15(1):703. doi: 10.1186/1471-2164-15-703. BMC Genomics. 2014. PMID: 25149441 Free PMC article.

8

Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework.

Jagtap PD, Johnson JE, Onsongo G, Sadler FW, Murray K, Wang Y, Shenykman GM, Bandhakavi S, Smith LM, Griffin TJ. Jagtap PD, et al. J Proteome Res. 2014 Dec 5;13(12):5898-908. doi: 10.1021/pr500812t. Epub 2014 Oct 23. J Proteome Res. 2014. PMID: 25301683 Free PMC article.

9

Multi-omic data analysis using Galaxy.

Boekel J, Chilton JM, Cooke IR, Horvatovich PL, Jagtap PD, Käll L, Lehtiö J, Lukasse P, Moerland PD, Griffin TJ. Boekel J, et al. Among authors: jagtap pd. Nat Biotechnol. 2015 Feb;33(2):137-9. doi: 10.1038/nbt.3134. Nat Biotechnol. 2015. PMID: 25658277 No abstract available.

10

Metaproteomic analysis using the Galaxy framework.

Jagtap PD, Blakely A, Murray K, Stewart S, Kooren J, Johnson JE, Rhodus NL, Rudney J, Griffin TJ. Jagtap PD, et al. Proteomics. 2015 Oct;15(20):3553-65. doi: 10.1002/pmic.201500074. Epub 2015 Jul 24. Proteomics. 2015. PMID: 26058579

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