Xu Q - Search Results

1

CpAMs induce assembly of HBV capsids with altered electrophoresis mobility: Implications for mechanism of inhibiting pgRNA packaging.

Wu S, Luo Y, Viswanathan U, Kulp J, Cheng J, Hu Z, Xu Q, Zhou Y, Gong GZ, Chang J, Li Y, Guo JT. Wu S, et al. Among authors: xu q. Antiviral Res. 2018 Nov;159:1-12. doi: 10.1016/j.antiviral.2018.09.001. Epub 2018 Sep 7. Antiviral Res. 2018. PMID: 30201396 Free PMC article.

2

The protein common assembly database (ProtCAD)-a comprehensive structural resource of protein complexes.

Xu Q, Dunbrack RL. Xu Q, et al. Nucleic Acids Res. 2023 Jan 6;51(D1):D466-D478. doi: 10.1093/nar/gkac937. Nucleic Acids Res. 2023. PMID: 36300618 Free PMC article.

3

Prediction of phenotypes of missense mutations in human proteins from biological assemblies.

Wei Q, Xu Q, Dunbrack RL Jr. Wei Q, et al. Among authors: xu q. Proteins. 2013 Feb;81(2):199-213. doi: 10.1002/prot.24176. Epub 2012 Nov 5. Proteins. 2013. PMID: 22965855 Free PMC article.

4

The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms.

Xu Q, Dunbrack RL Jr. Xu Q, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D761-70. doi: 10.1093/nar/gkq1059. Epub 2010 Oct 29. Nucleic Acids Res. 2011. PMID: 21036862 Free PMC article.

5

Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB.

Xu Q, Dunbrack RL Jr. Xu Q, et al. Bioinformatics. 2012 Nov 1;28(21):2763-72. doi: 10.1093/bioinformatics/bts533. Epub 2012 Aug 31. Bioinformatics. 2012. PMID: 22942020 Free PMC article.

6

Identifying three-dimensional structures of autophosphorylation complexes in crystals of protein kinases.

Xu Q, Malecka KL, Fink L, Jordan EJ, Duffy E, Kolander S, Peterson JR, Dunbrack RL Jr. Xu Q, et al. Sci Signal. 2015 Dec 1;8(405):rs13. doi: 10.1126/scisignal.aaa6711. Sci Signal. 2015. PMID: 26628682 Free PMC article.

7

ProtCID: a data resource for structural information on protein interactions.

Xu Q, Dunbrack RL Jr. Xu Q, et al. Nat Commun. 2020 Feb 5;11(1):711. doi: 10.1038/s41467-020-14301-4. Nat Commun. 2020. PMID: 32024829 Free PMC article.

8

BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers.

Shapovalov MV, Wang Q, Xu Q, Andrake M, Dunbrack RL Jr. Shapovalov MV, et al. Among authors: xu q. PLoS One. 2014 Jun 12;9(6):e98309. doi: 10.1371/journal.pone.0098309. eCollection 2014. PLoS One. 2014. PMID: 24922057 Free PMC article.

9

Statistical analysis of interface similarity in crystals of homologous proteins.

Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL Jr. Xu Q, et al. J Mol Biol. 2008 Aug 29;381(2):487-507. doi: 10.1016/j.jmb.2008.06.002. Epub 2008 Jun 7. J Mol Biol. 2008. PMID: 18599072 Free PMC article.

10

ProtBuD: a database of biological unit structures of protein families and superfamilies.

Xu Q, Canutescu A, Obradovic Z, Dunbrack RL Jr. Xu Q, et al. Bioinformatics. 2006 Dec 1;22(23):2876-82. doi: 10.1093/bioinformatics/btl490. Epub 2006 Oct 2. Bioinformatics. 2006. PMID: 17018535

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