Zavolan M - Search Results

1

Roquin targets mRNAs in a 3'-UTR-specific manner by different modes of regulation.

Essig K, Kronbeck N, Guimaraes JC, Lohs C, Schlundt A, Hoffmann A, Behrens G, Brenner S, Kowalska J, Lopez-Rodriguez C, Jemielity J, Holtmann H, Reiche K, Hackermüller J, Sattler M, Zavolan M, Heissmeyer V. Essig K, et al. Among authors: zavolan m. Nat Commun. 2018 Sep 19;9(1):3810. doi: 10.1038/s41467-018-06184-3. Nat Commun. 2018. PMID: 30232334 Free PMC article.

2

Ribosomal protein RPL39L is an efficiency factor in the cotranslational folding of a subset of proteins with alpha helical domains.

Banerjee A, Ataman M, Smialek MJ, Mookherjee D, Rabl J, Mironov A, Mues L, Enkler L, Coto-Llerena M, Schmidt A, Boehringer D, Piscuoglio S, Spang A, Mittal N, Zavolan M. Banerjee A, et al. Among authors: zavolan m. Nucleic Acids Res. 2024 Aug 27;52(15):9028-9048. doi: 10.1093/nar/gkae630. Nucleic Acids Res. 2024. PMID: 39041433 Free PMC article.

3

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins.

Kishore S, Jaskiewicz L, Burger L, Hausser J, Khorshid M, Zavolan M. Kishore S, et al. Among authors: zavolan m. Nat Methods. 2011 May 15;8(7):559-64. doi: 10.1038/nmeth.1608. Nat Methods. 2011. PMID: 21572407

4

A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets.

Khorshid M, Hausser J, Zavolan M, van Nimwegen E. Khorshid M, et al. Among authors: zavolan m. Nat Methods. 2013 Mar;10(3):253-5. doi: 10.1038/nmeth.2341. Epub 2013 Jan 20. Nat Methods. 2013. PMID: 23334102

5

Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs.

Zünd D, Gruber AR, Zavolan M, Mühlemann O. Zünd D, et al. Among authors: zavolan m. Nat Struct Mol Biol. 2013 Aug;20(8):936-43. doi: 10.1038/nsmb.2635. Epub 2013 Jul 7. Nat Struct Mol Biol. 2013. PMID: 23832275

6

Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells.

Gruber AR, Martin G, Müller P, Schmidt A, Gruber AJ, Gumienny R, Mittal N, Jayachandran R, Pieters J, Keller W, van Nimwegen E, Zavolan M. Gruber AR, et al. Among authors: zavolan m. Nat Commun. 2014 Nov 21;5:5465. doi: 10.1038/ncomms6465. Nat Commun. 2014. PMID: 25413384 Free article.

7

Accurate transcriptome-wide prediction of microRNA targets and small interfering RNA off-targets with MIRZA-G.

Gumienny R, Zavolan M. Gumienny R, et al. Among authors: zavolan m. Nucleic Acids Res. 2015 Feb 18;43(3):1380-91. doi: 10.1093/nar/gkv050. Epub 2015 Jan 27. Nucleic Acids Res. 2015. PMID: 25628353 Free PMC article.

8

Roquin recognizes a non-canonical hexaloop structure in the 3'-UTR of Ox40.

Janowski R, Heinz GA, Schlundt A, Wommelsdorf N, Brenner S, Gruber AR, Blank M, Buch T, Buhmann R, Zavolan M, Niessing D, Heissmeyer V, Sattler M. Janowski R, et al. Among authors: zavolan m. Nat Commun. 2016 Mar 24;7:11032. doi: 10.1038/ncomms11032. Nat Commun. 2016. PMID: 27010430 Free PMC article.

9

A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.

Gruber AJ, Schmidt R, Gruber AR, Martin G, Ghosh S, Belmadani M, Keller W, Zavolan M. Gruber AJ, et al. Among authors: zavolan m. Genome Res. 2016 Aug;26(8):1145-59. doi: 10.1101/gr.202432.115. Epub 2016 Jul 5. Genome Res. 2016. PMID: 27382025 Free PMC article.

10

Patterns of ribosomal protein expression specify normal and malignant human cells.

Guimaraes JC, Zavolan M. Guimaraes JC, et al. Among authors: zavolan m. Genome Biol. 2016 Nov 24;17(1):236. doi: 10.1186/s13059-016-1104-z. Genome Biol. 2016. PMID: 27884178 Free PMC article.

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