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Genome-wide methylation data mirror ancestry information.
Rahmani E, Shenhav L, Schweiger R, Yousefi P, Huen K, Eskenazi B, Eng C, Huntsman S, Hu D, Galanter J, Oh SS, Waldenberger M, Strauch K, Grallert H, Meitinger T, Gieger C, Holland N, Burchard EG, Zaitlen N, Halperin E. Rahmani E, et al. Among authors: shenhav l. Epigenetics Chromatin. 2017 Jan 3;10:1. doi: 10.1186/s13072-016-0108-y. eCollection 2017. Epigenetics Chromatin. 2017. PMID: 28149326 Free PMC article.
FEAST: fast expectation-maximization for microbial source tracking.
Shenhav L, Thompson M, Joseph TA, Briscoe L, Furman O, Bogumil D, Mizrahi I, Pe'er I, Halperin E. Shenhav L, et al. Nat Methods. 2019 Jul;16(7):627-632. doi: 10.1038/s41592-019-0431-x. Epub 2019 Jun 10. Nat Methods. 2019. PMID: 31182859 Free PMC article.
Compositional Lotka-Volterra describes microbial dynamics in the simplex.
Joseph TA, Shenhav L, Xavier JB, Halperin E, Pe'er I. Joseph TA, et al. Among authors: shenhav l. PLoS Comput Biol. 2020 May 29;16(5):e1007917. doi: 10.1371/journal.pcbi.1007917. eCollection 2020 May. PLoS Comput Biol. 2020. PMID: 32469867 Free PMC article.
35 results