Bell EW - Search Results

1

I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction.

Zhou X, Zheng W, Li Y, Pearce R, Zhang C, Bell EW, Zhang G, Zhang Y. Zhou X, et al. Among authors: bell ew. Nat Protoc. 2022 Oct;17(10):2326-2353. doi: 10.1038/s41596-022-00728-0. Epub 2022 Aug 5. Nat Protoc. 2022. PMID: 35931779 Review.

2

PEPPI: Whole-proteome Protein-protein Interaction Prediction through Structure and Sequence Similarity, Functional Association, and Machine Learning.

Bell EW, Schwartz JH, Freddolino PL, Zhang Y. Bell EW, et al. J Mol Biol. 2022 Jun 15;434(11):167530. doi: 10.1016/j.jmb.2022.167530. Epub 2022 Mar 5. J Mol Biol. 2022. PMID: 35662463 Free PMC article.

3

Protein inter-residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14.

Li Y, Zhang C, Zheng W, Zhou X, Bell EW, Yu DJ, Zhang Y. Li Y, et al. Among authors: bell ew. Proteins. 2021 Dec;89(12):1911-1921. doi: 10.1002/prot.26211. Epub 2021 Aug 19. Proteins. 2021. PMID: 34382712 Free PMC article.

4

Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations.

Zheng W, Zhang C, Li Y, Pearce R, Bell EW, Zhang Y. Zheng W, et al. Among authors: bell ew. Cell Rep Methods. 2021 Jul 26;1(3):100014. doi: 10.1016/j.crmeth.2021.100014. Epub 2021 Jun 21. Cell Rep Methods. 2021. PMID: 34355210 Free PMC article.

5

Protein structure prediction using deep learning distance and hydrogen-bonding restraints in CASP14.

Zheng W, Li Y, Zhang C, Zhou X, Pearce R, Bell EW, Huang X, Zhang Y. Zheng W, et al. Among authors: bell ew. Proteins. 2021 Dec;89(12):1734-1751. doi: 10.1002/prot.26193. Epub 2021 Aug 7. Proteins. 2021. PMID: 34331351 Free PMC article.

6

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks.

Li Y, Zhang C, Bell EW, Zheng W, Zhou X, Yu DJ, Zhang Y. Li Y, et al. Among authors: bell ew. PLoS Comput Biol. 2021 Mar 26;17(3):e1008865. doi: 10.1371/journal.pcbi.1008865. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33770072 Free PMC article.

7

EDock: blind protein-ligand docking by replica-exchange monte carlo simulation.

Zhang W, Bell EW, Yin M, Zhang Y. Zhang W, et al. Among authors: bell ew. J Cheminform. 2020 May 27;12(1):37. doi: 10.1186/s13321-020-00440-9. J Cheminform. 2020. PMID: 33430966 Free PMC article.

8

Protein structure and sequence re-analysis of 2019-nCoV genome does not indicate snakes as its intermediate host or the unique similarity between its spike protein insertions and HIV-1.

Zhang C, Zheng W, Huang X, Bell EW, Zhou X, Zhang Y. Zhang C, et al. Among authors: bell ew. bioRxiv [Preprint]. 2020 Feb 8:2020.02.04.933135. doi: 10.1101/2020.02.04.933135. bioRxiv. 2020. Update in: J Proteome Res. 2020 Apr 3;19(4):1351-1360. doi: 10.1021/acs.jproteome.0c00129 PMID: 32511314 Free PMC article. Updated. Preprint.

9

Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1.

Zhang C, Zheng W, Huang X, Bell EW, Zhou X, Zhang Y. Zhang C, et al. Among authors: bell ew. J Proteome Res. 2020 Apr 3;19(4):1351-1360. doi: 10.1021/acs.jproteome.0c00129. Epub 2020 Mar 24. J Proteome Res. 2020. PMID: 32200634 Free PMC article.

10

Recombinant Penicillium oxalicum 16 β-Glucosidase 1 Displays Comprehensive Inhibitory Resistance to Several Lignocellulose Pretreatment Products, Ethanol, and Salt.

Li H, Yi S, Bell EW, Huang Q, Zhao X. Li H, et al. Among authors: bell ew. Appl Biochem Biotechnol. 2020 Jun;191(2):772-784. doi: 10.1007/s12010-019-03183-y. Epub 2019 Dec 20. Appl Biochem Biotechnol. 2020. PMID: 31858406 Free PMC article.

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