Wang Y - Search Results

1

Structural and dynamic basis of substrate permissiveness in hydroxycinnamoyltransferase (HCT).

Chiang YC, Levsh O, Lam CK, Weng JK, Wang Y. Chiang YC, et al. Among authors: wang y. PLoS Comput Biol. 2018 Oct 26;14(10):e1006511. doi: 10.1371/journal.pcbi.1006511. eCollection 2018 Oct. PLoS Comput Biol. 2018. PMID: 30365487 Free PMC article.

2

Virtual substitution scan via single-step free energy perturbation.

Chiang YC, Wang Y. Chiang YC, et al. Among authors: wang y. Biopolymers. 2016 Jun;105(6):324-336. doi: 10.1002/bip.22820. Biopolymers. 2016. PMID: 26850092

3

Dynamic Conformational States Dictate Selectivity toward the Native Substrate in a Substrate-Permissive Acyltransferase.

Levsh O, Chiang YC, Tung CF, Noel JP, Wang Y, Weng JK. Levsh O, et al. Among authors: wang y. Biochemistry. 2016 Nov 15;55(45):6314-6326. doi: 10.1021/acs.biochem.6b00887. Epub 2016 Nov 2. Biochemistry. 2016. PMID: 27805809 Free PMC article.

4

The role of intramolecular nonbonded interaction and angle sampling in single-step free energy perturbation.

Chiang YC, Pang YT, Wang Y. Chiang YC, et al. Among authors: wang y. J Chem Phys. 2016 Dec 21;145(23):234109. doi: 10.1063/1.4972230. J Chem Phys. 2016. PMID: 28010084

5

Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants.

Liou G, Chiang YC, Wang Y, Weng JK. Liou G, et al. Among authors: wang y. J Biol Chem. 2018 Nov 30;293(48):18601-18612. doi: 10.1074/jbc.RA118.005695. Epub 2018 Oct 5. J Biol Chem. 2018. PMID: 30291143 Free PMC article.

6

Structural basis for divergent and convergent evolution of catalytic machineries in plant aromatic amino acid decarboxylase proteins.

Torrens-Spence MP, Chiang YC, Smith T, Vicent MA, Wang Y, Weng JK. Torrens-Spence MP, et al. Among authors: wang y. Proc Natl Acad Sci U S A. 2020 May 19;117(20):10806-10817. doi: 10.1073/pnas.1920097117. Epub 2020 May 5. Proc Natl Acad Sci U S A. 2020. PMID: 32371491 Free PMC article.

7

Orientation and Membrane Partition Free Energy of PeT-Based Voltage-Sensitive Dyes from Molecular Simulations.

Lam CK, Fung LY, Wang Y. Lam CK, et al. Among authors: wang y. J Phys Chem B. 2024 Mar 21;128(11):2734-2744. doi: 10.1021/acs.jpcb.3c08090. Epub 2024 Mar 9. J Phys Chem B. 2024. PMID: 38459942 Free PMC article.

8

Mechanistic basis for the emergence of EPS1 as a catalyst in salicylic acid biosynthesis of Brassicaceae.

Torrens-Spence MP, Matos JO, Li T, Kastner DW, Kim CY, Wang Z, Glinkerman CM, Sherk J, Kulik HJ, Wang Y, Weng JK. Torrens-Spence MP, et al. Among authors: wang z, wang y. Nat Commun. 2024 Nov 28;15(1):10356. doi: 10.1038/s41467-024-54437-1. Nat Commun. 2024. PMID: 39609394 Free PMC article.

9

Active-Site Oxygen Accessibility and Catalytic Loop Dynamics of Plant Aromatic Amino Acid Decarboxylases from Molecular Simulations.

Gou Y, Li T, Wang Y. Gou Y, et al. Among authors: wang y. Biochemistry. 2024 Aug 6;63(15):1980-1990. doi: 10.1021/acs.biochem.4c00144. Epub 2024 Jul 15. Biochemistry. 2024. PMID: 39008055 Free PMC article.

10

Free Energy Calculation of Nanodiamond-Membrane Association-The Effect of Shape and Surface Functionalization.

Ge Z, Li Q, Wang Y. Ge Z, et al. Among authors: wang y. J Chem Theory Comput. 2014 Jul 8;10(7):2751-8. doi: 10.1021/ct500194s. J Chem Theory Comput. 2014. PMID: 26586506

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