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Page 1
Deciphering human ribonucleoprotein regulatory networks.
Mukherjee N, Wessels HH, Lebedeva S, Sajek M, Ghanbari M, Garzia A, Munteanu A, Yusuf D, Farazi T, Hoell JI, Akat KM, Akalin A, Tuschl T, Ohler U. Mukherjee N, et al. Among authors: akalin a. Nucleic Acids Res. 2019 Jan 25;47(2):570-581. doi: 10.1093/nar/gky1185. Nucleic Acids Res. 2019. PMID: 30517751 Free PMC article.
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Grüning BA, Fallmann J, Yusuf D, Will S, Erxleben A, Eggenhofer F, Houwaart T, Batut B, Videm P, Bagnacani A, Wolfien M, Lott SC, Hoogstrate Y, Hess WR, Wolkenhauer O, Hoffmann S, Akalin A, Ohler U, Stadler PF, Backofen R. Grüning BA, et al. Among authors: akalin a. Nucleic Acids Res. 2017 Jul 3;45(W1):W560-W566. doi: 10.1093/nar/gkx409. Nucleic Acids Res. 2017. PMID: 28582575 Free PMC article.
Strategies for analyzing bisulfite sequencing data.
Wreczycka K, Gosdschan A, Yusuf D, Grüning B, Assenov Y, Akalin A. Wreczycka K, et al. Among authors: akalin a. J Biotechnol. 2017 Nov 10;261:105-115. doi: 10.1016/j.jbiotec.2017.08.007. Epub 2017 Aug 16. J Biotechnol. 2017. PMID: 28822795 Free article. Review.
RNA localization is a key determinant of neurite-enriched proteome.
Zappulo A, van den Bruck D, Ciolli Mattioli C, Franke V, Imami K, McShane E, Moreno-Estelles M, Calviello L, Filipchyk A, Peguero-Sanchez E, Müller T, Woehler A, Birchmeier C, Merino E, Rajewsky N, Ohler U, Mazzoni EO, Selbach M, Akalin A, Chekulaeva M. Zappulo A, et al. Among authors: akalin a. Nat Commun. 2017 Sep 19;8(1):583. doi: 10.1038/s41467-017-00690-6. Nat Commun. 2017. PMID: 28928394 Free PMC article.
HOT or not: examining the basis of high-occupancy target regions.
Wreczycka K, Franke V, Uyar B, Wurmus R, Bulut S, Tursun B, Akalin A. Wreczycka K, et al. Among authors: akalin a. Nucleic Acids Res. 2019 Jun 20;47(11):5735-5745. doi: 10.1093/nar/gkz460. Nucleic Acids Res. 2019. PMID: 31114922 Free PMC article.
Deep learning for genomics using Janggu.
Kopp W, Monti R, Tamburrini A, Ohler U, Akalin A. Kopp W, et al. Among authors: akalin a. Nat Commun. 2020 Jul 13;11(1):3488. doi: 10.1038/s41467-020-17155-y. Nat Commun. 2020. PMID: 32661261 Free PMC article.
213 results