Liu B - Search Results

1

The RRM of the kRNA-editing protein TbRGG2 uses multiple surfaces to bind and remodel RNA.

Travis B, Shaw PLR, Liu B, Ravindra K, Iliff H, Al-Hashimi HM, Schumacher MA. Travis B, et al. Among authors: liu b. Nucleic Acids Res. 2019 Feb 28;47(4):2130-2142. doi: 10.1093/nar/gky1259. Nucleic Acids Res. 2019. PMID: 30544166 Free PMC article.

2

A potentially abundant junctional RNA motif stabilized by m⁶A and Mg².

Liu B, Merriman DK, Choi SH, Schumacher MA, Plangger R, Kreutz C, Horner SM, Meyer KD, Al-Hashimi HM. Liu B, et al. Nat Commun. 2018 Jul 17;9(1):2761. doi: 10.1038/s41467-018-05243-z. Nat Commun. 2018. PMID: 30018356 Free PMC article.

3

Why are Hoogsteen base pairs energetically disfavored in A-RNA compared to B-DNA?

Rangadurai A, Zhou H, Merriman DK, Meiser N, Liu B, Shi H, Szymanski ES, Al-Hashimi HM. Rangadurai A, et al. Among authors: liu b. Nucleic Acids Res. 2018 Nov 16;46(20):11099-11114. doi: 10.1093/nar/gky885. Nucleic Acids Res. 2018. PMID: 30285154 Free PMC article.

4

m6A minimally impacts the structure, dynamics, and Rev ARM binding properties of HIV-1 RRE stem IIB.

Chu CC, Liu B, Plangger R, Kreutz C, Al-Hashimi HM. Chu CC, et al. Among authors: liu b. PLoS One. 2019 Dec 11;14(12):e0224850. doi: 10.1371/journal.pone.0224850. eCollection 2019. PLoS One. 2019. PMID: 31825959 Free PMC article.

5

NMR Chemical Exchange Measurements Reveal That N⁶-Methyladenosine Slows RNA Annealing.

Shi H, Liu B, Nussbaumer F, Rangadurai A, Kreutz C, Al-Hashimi HM. Shi H, et al. Among authors: liu b. J Am Chem Soc. 2019 Dec 26;141(51):19988-19993. doi: 10.1021/jacs.9b10939. Epub 2019 Dec 16. J Am Chem Soc. 2019. PMID: 31826614 Free PMC article.

6

Anomalous Reverse Transcription through Chemical Modifications in Polyadenosine Stretches.

Kladwang W, Topkar VV, Liu B, Rangan R, Hodges TL, Keane SC, Al-Hashimi H, Das R. Kladwang W, et al. Among authors: liu b. Biochemistry. 2020 Jun 16;59(23):2154-2170. doi: 10.1021/acs.biochem.0c00020. Epub 2020 Jun 1. Biochemistry. 2020. PMID: 32407625 Free PMC article.

7

Hoogsteen base pairs increase the susceptibility of double-stranded DNA to cytotoxic damage.

Xu Y, Manghrani A, Liu B, Shi H, Pham U, Liu A, Al-Hashimi HM. Xu Y, et al. Among authors: liu b, liu a. J Biol Chem. 2020 Nov 20;295(47):15933-15947. doi: 10.1074/jbc.RA120.014530. Epub 2020 Sep 10. J Biol Chem. 2020. PMID: 32913127 Free PMC article.

8

2'-O-Methylation can increase the abundance and lifetime of alternative RNA conformational states.

Abou Assi H, Rangadurai AK, Shi H, Liu B, Clay MC, Erharter K, Kreutz C, Holley CL, Al-Hashimi HM. Abou Assi H, et al. Among authors: liu b. Nucleic Acids Res. 2020 Dec 2;48(21):12365-12379. doi: 10.1093/nar/gkaa928. Nucleic Acids Res. 2020. PMID: 33104789 Free PMC article.

9

Developments in solution-state NMR yield broader and deeper views of the dynamic ensembles of nucleic acids.

Liu B, Shi H, Al-Hashimi HM. Liu B, et al. Curr Opin Struct Biol. 2021 Oct;70:16-25. doi: 10.1016/j.sbi.2021.02.007. Epub 2021 Apr 6. Curr Opin Struct Biol. 2021. PMID: 33836446 Free PMC article. Review.

10

A quantitative model predicts how m⁶A reshapes the kinetic landscape of nucleic acid hybridization and conformational transitions.

Liu B, Shi H, Rangadurai A, Nussbaumer F, Chu CC, Erharter KA, Case DA, Kreutz C, Al-Hashimi HM. Liu B, et al. Nat Commun. 2021 Aug 31;12(1):5201. doi: 10.1038/s41467-021-25253-8. Nat Commun. 2021. PMID: 34465779 Free PMC article.

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