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Salmonella enterica and Escherichia coli in Wheat Flour: Detection and Serotyping by a Quasimetagenomic Approach Assisted by Magnetic Capture, Multiple-Displacement Amplification, and Real-Time Sequencing.
Forghani F, Li S, Zhang S, Mann DA, Deng X, den Bakker HC, Diez-Gonzalez F. Forghani F, et al. Appl Environ Microbiol. 2020 Jun 17;86(13):e00097-20. doi: 10.1128/AEM.00097-20. Print 2020 Jun 17. Appl Environ Microbiol. 2020. PMID: 32358002 Free PMC article.
Mashtree: a rapid comparison of whole genome sequence files.
Katz LS, Griswold T, Morrison SS, Caravas JA, Zhang S, den Bakker HC, Deng X, Carleton HA. Katz LS, et al. J Open Source Softw. 2019 Dec 10;4(44):10.21105/joss.01762. doi: 10.21105/joss.01762. J Open Source Softw. 2019. PMID: 35978566 Free PMC article. No abstract available.
High-Resolution Genomic Comparisons within Salmonella enterica Serotypes Derived from Beef Feedlot Cattle: Parsing the Roles of Cattle Source, Pen, Animal, Sample Type, and Production Period.
Levent G, Schlochtermeier A, Ives SE, Norman KN, Lawhon SD, Loneragan GH, Anderson RC, Vinasco J, den Bakker HC, Scott HM. Levent G, et al. Among authors: den bakker hc. Appl Environ Microbiol. 2021 May 26;87(12):e0048521. doi: 10.1128/AEM.00485-21. Epub 2021 May 26. Appl Environ Microbiol. 2021. PMID: 33863705 Free PMC article.
Whole-Genome Sequencing of Drug-Resistant Salmonella enterica Isolates from Dairy Cattle and Humans in New York and Washington States Reveals Source and Geographic Associations.
Carroll LM, Wiedmann M, den Bakker H, Siler J, Warchocki S, Kent D, Lyalina S, Davis M, Sischo W, Besser T, Warnick LD, Pereira RV. Carroll LM, et al. Among authors: den bakker h. Appl Environ Microbiol. 2017 May 31;83(12):e00140-17. doi: 10.1128/AEM.00140-17. Print 2017 Jun 15. Appl Environ Microbiol. 2017. PMID: 28389536 Free PMC article.
83 results