Domingo-Fernández D - Search Results

1

ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases.

Domingo-Fernández D, Hoyt CT, Bobis-Álvarez C, Marín-Llaó J, Hofmann-Apitius M. Domingo-Fernández D, et al. NPJ Syst Biol Appl. 2018 Dec 13;5:3. doi: 10.1038/s41540-018-0078-8. eCollection 2019. NPJ Syst Biol Appl. 2018. PMID: 30564458 Free PMC article.

2

Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment.

Domingo-Fernández D, Kodamullil AT, Iyappan A, Naz M, Emon MA, Raschka T, Karki R, Springstubbe S, Ebeling C, Hofmann-Apitius M. Domingo-Fernández D, et al. Bioinformatics. 2017 Nov 15;33(22):3679-3681. doi: 10.1093/bioinformatics/btx399. Bioinformatics. 2017. PMID: 28651363 Free PMC article.

3

A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities.

Hoyt CT, Domingo-Fernández D, Balzer N, Güldenpfennig A, Hofmann-Apitius M. Hoyt CT, et al. Database (Oxford). 2018 Jan 1;2018:bay050. doi: 10.1093/database/bay050. Database (Oxford). 2018. PMID: 29873705 Free PMC article.

4

Using Multi-Scale Genetic, Neuroimaging and Clinical Data for Predicting Alzheimer's Disease and Reconstruction of Relevant Biological Mechanisms.

Khanna S, Domingo-Fernández D, Iyappan A, Emon MA, Hofmann-Apitius M, Fröhlich H. Khanna S, et al. Sci Rep. 2018 Jul 24;8(1):11173. doi: 10.1038/s41598-018-29433-3. Sci Rep. 2018. PMID: 30042519 Free PMC article.

5

BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language.

Hoyt CT, Domingo-Fernández D, Hofmann-Apitius M. Hoyt CT, et al. Database (Oxford). 2018 Jan 1;2018:bay126. doi: 10.1093/database/bay126. Database (Oxford). 2018. PMID: 30576488 Free PMC article.

6

BioKEEN: a library for learning and evaluating biological knowledge graph embeddings.

Ali M, Hoyt CT, Domingo-Fernández D, Lehmann J, Jabeen H. Ali M, et al. Bioinformatics. 2019 Sep 15;35(18):3538-3540. doi: 10.1093/bioinformatics/btz117. Bioinformatics. 2019. PMID: 30768158

7

Erratum: Publisher Correction: ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases.

Domingo-Fernández D, Hoyt CT, Bobis-Álvarez C, Marín-Llaó J, Hofmann-Apitius M. Domingo-Fernández D, et al. NPJ Syst Biol Appl. 2019 Mar 7;5:10. doi: 10.1038/s41540-019-0082-7. eCollection 2019. NPJ Syst Biol Appl. 2019. PMID: 30854225 Free PMC article.

8

PathMe: merging and exploring mechanistic pathway knowledge.

Domingo-Fernández D, Mubeen S, Marín-Llaó J, Hoyt CT, Hofmann-Apitius M. Domingo-Fernández D, et al. BMC Bioinformatics. 2019 May 15;20(1):243. doi: 10.1186/s12859-019-2863-9. BMC Bioinformatics. 2019. PMID: 31092193 Free PMC article.

9

Re-curation and rational enrichment of knowledge graphs in Biological Expression Language.

Hoyt CT, Domingo-Fernández D, Aldisi R, Xu L, Kolpeja K, Spalek S, Wollert E, Bachman J, Gyori BM, Greene P, Hofmann-Apitius M. Hoyt CT, et al. Database (Oxford). 2019 Jan 1;2019:baz068. doi: 10.1093/database/baz068. Database (Oxford). 2019. PMID: 31225582 Free PMC article.

10

PTSD Biomarker Database: deep dive metadatabase for PTSD biomarkers, visualizations and analysis tools.

Domingo-Fernández D, Provost A, Kodamullil AT, Marín-Llaó J, Lasseter H, Diaz K, Daskalakis NP, Lancashire L, Hofmann-Apitius M, Haas M. Domingo-Fernández D, et al. Database (Oxford). 2019 Jan 1;2019:baz081. doi: 10.1093/database/baz081. Database (Oxford). 2019. PMID: 31260040 Free PMC article.

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