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Deep clustering of protein folding simulations.
Bhowmik D, Gao S, Young MT, Ramanathan A. Bhowmik D, et al. Among authors: gao s. BMC Bioinformatics. 2018 Dec 21;19(Suppl 18):484. doi: 10.1186/s12859-018-2507-5. BMC Bioinformatics. 2018. PMID: 30577777 Free PMC article.
Classifying cancer pathology reports with hierarchical self-attention networks.
Gao S, Qiu JX, Alawad M, Hinkle JD, Schaefferkoetter N, Yoon HJ, Christian B, Fearn PA, Penberthy L, Wu XC, Coyle L, Tourassi G, Ramanathan A. Gao S, et al. Artif Intell Med. 2019 Nov;101:101726. doi: 10.1016/j.artmed.2019.101726. Epub 2019 Oct 15. Artif Intell Med. 2019. PMID: 31813492 Free article.
Using case-level context to classify cancer pathology reports.
Gao S, Alawad M, Schaefferkoetter N, Penberthy L, Wu XC, Durbin EB, Coyle L, Ramanathan A, Tourassi G. Gao S, et al. PLoS One. 2020 May 12;15(5):e0232840. doi: 10.1371/journal.pone.0232840. eCollection 2020. PLoS One. 2020. PMID: 32396579 Free PMC article.
Deep active learning for classifying cancer pathology reports.
De Angeli K, Gao S, Alawad M, Yoon HJ, Schaefferkoetter N, Wu XC, Durbin EB, Doherty J, Stroup A, Coyle L, Penberthy L, Tourassi G. De Angeli K, et al. Among authors: gao s. BMC Bioinformatics. 2021 Mar 9;22(1):113. doi: 10.1186/s12859-021-04047-1. BMC Bioinformatics. 2021. PMID: 33750288 Free PMC article.
Language models for the prediction of SARS-CoV-2 inhibitors.
Blanchard AE, Gounley J, Bhowmik D, Chandra Shekar M, Lyngaas I, Gao S, Yin J, Tsaris A, Wang F, Glaser J. Blanchard AE, et al. Among authors: gao s. Int J High Perform Comput Appl. 2022 Nov;36(5-6):587-602. doi: 10.1177/10943420221121804. Int J High Perform Comput Appl. 2022. PMID: 38603308 Free PMC article.
Limitations of Transformers on Clinical Text Classification.
Gao S, Alawad M, Young MT, Gounley J, Schaefferkoetter N, Yoon HJ, Wu XC, Durbin EB, Doherty J, Stroup A, Coyle L, Tourassi G. Gao S, et al. IEEE J Biomed Health Inform. 2021 Sep;25(9):3596-3607. doi: 10.1109/JBHI.2021.3062322. Epub 2021 Sep 3. IEEE J Biomed Health Inform. 2021. PMID: 33635801 Free PMC article.
Deep Transfer Learning Across Cancer Registries for Information Extraction from Pathology Reports.
Alawad M, Gao S, Qiu J, Schaefferkoetter N, Hinkle JD, Yoon HJ, Christian JB, Wu XC, Durbin EB, Jeong JC, Hands I, Rust D, Tourassi G. Alawad M, et al. Among authors: gao s. IEEE EMBS Int Conf Biomed Health Inform. 2019 May;2019:10.1109/bhi.2019.8834586. doi: 10.1109/bhi.2019.8834586. Epub 2019 Sep 12. IEEE EMBS Int Conf Biomed Health Inform. 2019. PMID: 36081613 Free PMC article.
Privacy-Preserving Deep Learning NLP Models for Cancer Registries.
Alawad M, Yoon HJ, Gao S, Mumphrey B, Wu XC, Durbin EB, Jeong JC, Hands I, Rust D, Coyle L, Penberthy L, Tourassi G. Alawad M, et al. Among authors: gao s. IEEE Trans Emerg Top Comput. 2021 Jul-Sep;9(3):1219-1230. doi: 10.1109/tetc.2020.2983404. Epub 2020 Apr 16. IEEE Trans Emerg Top Comput. 2021. PMID: 36117774 Free PMC article.
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