Li XL - Search Results

1

Integrating node embeddings and biological annotations for genes to predict disease-gene associations.

Ata SK, Ou-Yang L, Fang Y, Kwoh CK, Wu M, Li XL. Ata SK, et al. Among authors: li xl. BMC Syst Biol. 2018 Dec 31;12(Suppl 9):138. doi: 10.1186/s12918-018-0662-y. BMC Syst Biol. 2018. PMID: 30598097 Free PMC article.

2

A core-attachment based method to detect protein complexes in PPI networks.

Wu M, Li X, Kwoh CK, Ng SK. Wu M, et al. BMC Bioinformatics. 2009 Jun 2;10:169. doi: 10.1186/1471-2105-10-169. BMC Bioinformatics. 2009. PMID: 19486541 Free PMC article.

3

Computational approaches for detecting protein complexes from protein interaction networks: a survey.

Li X, Wu M, Kwoh CK, Ng SK. Li X, et al. BMC Genomics. 2010 Feb 10;11 Suppl 1(Suppl 1):S3. doi: 10.1186/1471-2164-11-S1-S3. BMC Genomics. 2010. PMID: 20158874 Free PMC article.

4

Integrating diverse biological and computational sources for reliable protein-protein interactions.

Wu M, Li X, Chua HN, Kwoh CK, Ng SK. Wu M, et al. BMC Bioinformatics. 2010 Oct 15;11 Suppl 7(Suppl 7):S8. doi: 10.1186/1471-2105-11-S7-S8. BMC Bioinformatics. 2010. PMID: 21106130 Free PMC article.

5

Construction of co-complex score matrix for protein complex prediction from AP-MS data.

Xie Z, Kwoh CK, Li XL, Wu M. Xie Z, et al. Among authors: li xl. Bioinformatics. 2011 Jul 1;27(13):i159-66. doi: 10.1093/bioinformatics/btr212. Bioinformatics. 2011. PMID: 21685066 Free PMC article.

6

Discovery of protein complexes with core-attachment structures from Tandem Affinity Purification (TAP) data.

Wu M, Li XL, Kwoh CK, Ng SK, Wong L. Wu M, et al. Among authors: li xl. J Comput Biol. 2012 Sep;19(9):1027-42. doi: 10.1089/cmb.2010.0293. Epub 2011 Jul 21. J Comput Biol. 2012. PMID: 21777084 Free PMC article.

7

Inferring gene-phenotype associations via global protein complex network propagation.

Yang P, Li X, Wu M, Kwoh CK, Ng SK. Yang P, et al. PLoS One. 2011;6(7):e21502. doi: 10.1371/journal.pone.0021502. Epub 2011 Jul 25. PLoS One. 2011. PMID: 21799737 Free PMC article.

8

Positive-unlabeled learning for disease gene identification.

Yang P, Li XL, Mei JP, Kwoh CK, Ng SK. Yang P, et al. Among authors: li xl. Bioinformatics. 2012 Oct 15;28(20):2640-7. doi: 10.1093/bioinformatics/bts504. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923290 Free PMC article.

9

Drug-target interaction prediction by learning from local information and neighbors.

Mei JP, Kwoh CK, Yang P, Li XL, Zheng J. Mei JP, et al. Among authors: li xl. Bioinformatics. 2013 Jan 15;29(2):238-45. doi: 10.1093/bioinformatics/bts670. Epub 2012 Nov 17. Bioinformatics. 2013. PMID: 23162055

10

Benchmarking human protein complexes to investigate drug-related systems and evaluate predicted protein complexes.

Wu M, Yu Q, Li X, Zheng J, Huang JF, Kwoh CK. Wu M, et al. PLoS One. 2013;8(2):e53197. doi: 10.1371/journal.pone.0053197. Epub 2013 Feb 6. PLoS One. 2013. PMID: 23405067 Free PMC article.

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