Nye TM - Search Results

1

RNase HIII Is Important for Okazaki Fragment Processing in Bacillus subtilis.

Randall JR, Nye TM, Wozniak KJ, Simmons LA. Randall JR, et al. Among authors: nye tm. J Bacteriol. 2019 Mar 13;201(7):e00686-18. doi: 10.1128/JB.00686-18. Print 2019 Apr 1. J Bacteriol. 2019. PMID: 30670546 Free PMC article.

2

Implementation and Data Analysis of Tn-seq, Whole-Genome Resequencing, and Single-Molecule Real-Time Sequencing for Bacterial Genetics.

Burby PE, Nye TM, Schroeder JW, Simmons LA. Burby PE, et al. Among authors: nye tm. J Bacteriol. 2016 Dec 13;199(1):e00560-16. doi: 10.1128/JB.00560-16. Print 2017 Jan 1. J Bacteriol. 2016. PMID: 27672193 Free PMC article. Review.

3

Complete Genome Sequence of Undomesticated Bacillus subtilis Strain NCIB 3610.

Nye TM, Schroeder JW, Kearns DB, Simmons LA. Nye TM, et al. Genome Announc. 2017 May 18;5(20):e00364-17. doi: 10.1128/genomeA.00364-17. Genome Announc. 2017. PMID: 28522717 Free PMC article.

4

DNA methylation from a Type I restriction modification system influences gene expression and virulence in Streptococcus pyogenes.

Nye TM, Jacob KM, Holley EK, Nevarez JM, Dawid S, Simmons LA, Watson ME Jr. Nye TM, et al. PLoS Pathog. 2019 Jun 17;15(6):e1007841. doi: 10.1371/journal.ppat.1007841. eCollection 2019 Jun. PLoS Pathog. 2019. PMID: 31206562 Free PMC article.

5

Methyltransferase DnmA is responsible for genome-wide N6-methyladenosine modifications at non-palindromic recognition sites in Bacillus subtilis.

Nye TM, van Gijtenbeek LA, Stevens AG, Schroeder JW, Randall JR, Matthews LA, Simmons LA. Nye TM, et al. Nucleic Acids Res. 2020 Jun 4;48(10):5332-5348. doi: 10.1093/nar/gkaa266. Nucleic Acids Res. 2020. PMID: 32324221 Free PMC article.

6

RnhP is a plasmid-borne RNase HI that contributes to genome maintenance in the ancestral strain Bacillus subtilis NCIB 3610.

Nye TM, McLean EK, Burrage AM, Dennison DD, Kearns DB, Simmons LA. Nye TM, et al. Mol Microbiol. 2021 Jan;115(1):99-115. doi: 10.1111/mmi.14601. Epub 2020 Sep 25. Mol Microbiol. 2021. PMID: 32896031 Free PMC article.

7

A positive perspective on DNA methylation: regulatory functions of DNA methylation outside of host defense in Gram-positive bacteria.

Nye TM, Fernandez NL, Simmons LA. Nye TM, et al. Crit Rev Biochem Mol Biol. 2020 Dec;55(6):576-591. doi: 10.1080/10409238.2020.1828257. Epub 2020 Oct 15. Crit Rev Biochem Mol Biol. 2020. PMID: 33059472

8

Distinct heterochromatin-like domains promote transcriptional memory and silence parasitic genetic elements in bacteria.

Amemiya HM, Goss TJ, Nye TM, Hurto RL, Simmons LA, Freddolino PL. Amemiya HM, et al. Among authors: nye tm. EMBO J. 2022 Feb 1;41(3):e108708. doi: 10.15252/embj.2021108708. Epub 2021 Dec 28. EMBO J. 2022. PMID: 34961960 Free PMC article.

9

The Impact of RNA-DNA Hybrids on Genome Integrity in Bacteria.

McLean EK, Nye TM, Lowder FC, Simmons LA. McLean EK, et al. Among authors: nye tm. Annu Rev Microbiol. 2022 Sep 8;76:461-480. doi: 10.1146/annurev-micro-102521-014450. Epub 2022 Jun 2. Annu Rev Microbiol. 2022. PMID: 35655343 Free PMC article. Review.

10

DNA Methylation and RNA-DNA Hybrids Regulate the Single-Molecule Localization of a DNA Methyltransferase on the Bacterial Nucleoid.

Fernandez NL, Chen Z, Fuller DEH, van Gijtenbeek LA, Nye TM, Biteen JS, Simmons LA. Fernandez NL, et al. Among authors: nye tm. mBio. 2023 Feb 28;14(1):e0318522. doi: 10.1128/mbio.03185-22. Epub 2023 Jan 16. mBio. 2023. PMID: 36645292 Free PMC article.

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