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The Landscape of Circular RNA in Cancer.
Vo JN, Cieslik M, Zhang Y, Shukla S, Xiao L, Zhang Y, Wu YM, Dhanasekaran SM, Engelke CG, Cao X, Robinson DR, Nesvizhskii AI, Chinnaiyan AM. Vo JN, et al. Among authors: shukla s. Cell. 2019 Feb 7;176(4):869-881.e13. doi: 10.1016/j.cell.2018.12.021. Cell. 2019. PMID: 30735636 Free PMC article.
Two-pass alignment improves novel splice junction quantification.
Veeneman BA, Shukla S, Dhanasekaran SM, Chinnaiyan AM, Nesvizhskii AI. Veeneman BA, et al. Among authors: shukla s. Bioinformatics. 2016 Jan 1;32(1):43-9. doi: 10.1093/bioinformatics/btv642. Epub 2015 Oct 30. Bioinformatics. 2016. PMID: 26519505 Free PMC article.
Non-coding RNA LINC00857 is predictive of poor patient survival and promotes tumor progression via cell cycle regulation in lung cancer.
Wang L, He Y, Liu W, Bai S, Xiao L, Zhang J, Dhanasekaran SM, Wang Z, Kalyana-Sundaram S, Balbin OA, Shukla S, Lu Y, Lin J, Reddy RM, Carrott PW Jr, Lynch WR, Chang AC, Chinnaiyan AM, Beer DG, Zhang J, Chen G. Wang L, et al. Among authors: shukla s. Oncotarget. 2016 Mar 8;7(10):11487-99. doi: 10.18632/oncotarget.7203. Oncotarget. 2016. PMID: 26862852 Free PMC article.
Identification and Validation of PCAT14 as Prognostic Biomarker in Prostate Cancer.
Shukla S, Zhang X, Niknafs YS, Xiao L, Mehra R, Cieślik M, Ross A, Schaeffer E, Malik B, Guo S, Freier SM, Bui HH, Siddiqui J, Jing X, Cao X, Dhanasekaran SM, Feng FY, Chinnaiyan AM, Malik R. Shukla S, et al. Neoplasia. 2016 Aug;18(8):489-99. doi: 10.1016/j.neo.2016.07.001. Neoplasia. 2016. PMID: 27566105 Free PMC article.
Biallelic Alteration and Dysregulation of the Hippo Pathway in Mucinous Tubular and Spindle Cell Carcinoma of the Kidney.
Mehra R, Vats P, Cieslik M, Cao X, Su F, Shukla S, Udager AM, Wang R, Pan J, Kasaian K, Lonigro R, Siddiqui J, Premkumar K, Palapattu G, Weizer A, Hafez KS, Wolf JS Jr, Sangoi AR, Trpkov K, Osunkoya AO, Zhou M, Giannico G, McKenney JK, Dhanasekaran SM, Chinnaiyan AM. Mehra R, et al. Among authors: shukla s. Cancer Discov. 2016 Nov;6(11):1258-1266. doi: 10.1158/2159-8290.CD-16-0267. Epub 2016 Sep 7. Cancer Discov. 2016. PMID: 27604489 Free PMC article.
Development of a RNA-Seq Based Prognostic Signature in Lung Adenocarcinoma.
Shukla S, Evans JR, Malik R, Feng FY, Dhanasekaran SM, Cao X, Chen G, Beer DG, Jiang H, Chinnaiyan AM. Shukla S, et al. J Natl Cancer Inst. 2016 Oct 5;109(1):djw200. doi: 10.1093/jnci/djw200. Print 2017 Jan. J Natl Cancer Inst. 2016. PMID: 27707839 Free PMC article.
Age and Gender Associations of Virus Positivity in Merkel Cell Carcinoma Characterized Using a Novel RNA In Situ Hybridization Assay.
Wang L, Harms PW, Palanisamy N, Carskadon S, Cao X, Siddiqui J, Patel RM, Zelenka-Wang S, Durham AB, Fullen DR, Harms KL, Su F, Shukla S, Mehra R, Chinnaiyan AM. Wang L, et al. Among authors: shukla s. Clin Cancer Res. 2017 Sep 15;23(18):5622-5630. doi: 10.1158/1078-0432.CCR-17-0299. Epub 2017 Jun 12. Clin Cancer Res. 2017. PMID: 28606924 Free PMC article.
Detection of 6 TFEB-amplified renal cell carcinomas and 25 renal cell carcinomas with MITF translocations: systematic morphologic analysis of 85 cases evaluated by clinical TFE3 and TFEB FISH assays.
Skala SL, Xiao H, Udager AM, Dhanasekaran SM, Shukla S, Zhang Y, Landau C, Shao L, Roulston D, Wang L, Siddiqui J, Cao X, Magi-Galluzzi C, Zhang M, Osunkoya AO, Smith SC, McKenney JK, Betz BL, Myers JL, Chinnaiyan AM, Tomlins SA, Mehra R. Skala SL, et al. Among authors: shukla s. Mod Pathol. 2018 Jan;31(1):179-197. doi: 10.1038/modpathol.2017.99. Epub 2017 Aug 25. Mod Pathol. 2018. PMID: 28840857 Free article.
2,943 results