Zhou B - Search Results

1

Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562.

Zhou B, Ho SS, Greer SU, Zhu X, Bell JM, Arthur JG, Spies N, Zhang X, Byeon S, Pattni R, Ben-Efraim N, Haney MS, Haraksingh RR, Song G, Ji HP, Perrin D, Wong WH, Abyzov A, Urban AE. Zhou B, et al. Genome Res. 2019 Mar;29(3):472-484. doi: 10.1101/gr.234948.118. Epub 2019 Feb 8. Genome Res. 2019. PMID: 30737237 Free PMC article.

2

One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin.

Abyzov A, Tomasini L, Zhou B, Vasmatzis N, Coppola G, Amenduni M, Pattni R, Wilson M, Gerstein M, Weissman S, Urban AE, Vaccarino FM. Abyzov A, et al. Among authors: zhou b. Genome Res. 2017 Apr;27(4):512-523. doi: 10.1101/gr.215517.116. Epub 2017 Feb 24. Genome Res. 2017. PMID: 28235832 Free PMC article.

3

Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis.

Bae T, Tomasini L, Mariani J, Zhou B, Roychowdhury T, Franjic D, Pletikos M, Pattni R, Chen BJ, Venturini E, Riley-Gillis B, Sestan N, Urban AE, Abyzov A, Vaccarino FM. Bae T, et al. Among authors: zhou b. Science. 2018 Feb 2;359(6375):550-555. doi: 10.1126/science.aan8690. Epub 2017 Dec 7. Science. 2018. PMID: 29217587 Free PMC article.

4

Detection and Quantification of Mosaic Genomic DNA Variation in Primary Somatic Tissues Using ddPCR: Analysis of Mosaic Transposable-Element Insertions, Copy-Number Variants, and Single-Nucleotide Variants.

Zhou B, Haney MS, Zhu X, Pattni R, Abyzov A, Urban AE. Zhou B, et al. Methods Mol Biol. 2018;1768:173-190. doi: 10.1007/978-1-4939-7778-9_11. Methods Mol Biol. 2018. PMID: 29717444

5

Whole-genome sequencing analysis of CNV using low-coverage and paired-end strategies is efficient and outperforms array-based CNV analysis.

Zhou B, Ho SS, Zhang X, Pattni R, Haraksingh RR, Urban AE. Zhou B, et al. J Med Genet. 2018 Nov;55(11):735-743. doi: 10.1136/jmedgenet-2018-105272. Epub 2018 Jul 30. J Med Genet. 2018. PMID: 30061371 Free PMC article.

6

1q21.1 microduplication: large verbal-nonverbal performance discrepancy and ddPCR assays of HYDIN/HYDIN2 copy number.

Xavier J, Zhou B, Bilan F, Zhang X, Gilbert-Dussardier B, Viaux-Savelon S, Pattni R, Ho SS, Cohen D, Levinson DF, Urban AE, Laurent-Levinson C. Xavier J, et al. Among authors: zhou b. NPJ Genom Med. 2018 Aug 22;3:24. doi: 10.1038/s41525-018-0059-2. eCollection 2018. NPJ Genom Med. 2018. PMID: 30155272 Free PMC article.

7

Extensive and deep sequencing of the Venter/HuRef genome for developing and benchmarking genome analysis tools.

Zhou B, Arthur JG, Ho SS, Pattni R, Huang Y, Wong WH, Urban AE. Zhou B, et al. Sci Data. 2018 Dec 18;5:180261. doi: 10.1038/sdata.2018.261. Sci Data. 2018. PMID: 30561434 Free PMC article.

8

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2.

Zhou B, Ho SS, Greer SU, Spies N, Bell JM, Zhang X, Zhu X, Arthur JG, Byeon S, Pattni R, Saha I, Huang Y, Song G, Perrin D, Wong WH, Ji HP, Abyzov A, Urban AE. Zhou B, et al. Nucleic Acids Res. 2019 May 7;47(8):3846-3861. doi: 10.1093/nar/gkz169. Nucleic Acids Res. 2019. PMID: 30864654 Free PMC article.

9

Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA.

Yang EW, Bahn JH, Hsiao EY, Tan BX, Sun Y, Fu T, Zhou B, Van Nostrand EL, Pratt GA, Freese P, Wei X, Quinones-Valdez G, Urban AE, Graveley BR, Burge CB, Yeo GW, Xiao X. Yang EW, et al. Among authors: zhou b. Nat Commun. 2019 Mar 22;10(1):1338. doi: 10.1038/s41467-019-09292-w. Nat Commun. 2019. PMID: 30902979 Free PMC article.

10

Complex mosaic structural variations in human fetal brains.

Sekar S, Tomasini L, Proukakis C, Bae T, Manlove L, Jang Y, Scuderi S, Zhou B, Kalyva M, Amiri A, Mariani J, Sedlazeck FJ, Urban AE, Vaccarino FM, Abyzov A. Sekar S, et al. Among authors: zhou b. Genome Res. 2020 Dec;30(12):1695-1704. doi: 10.1101/gr.262667.120. Epub 2020 Oct 29. Genome Res. 2020. PMID: 33122304 Free PMC article.

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