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Statistical outbreak detection by joining medical records and pathogen similarity.
Miller JK, Chen J, Sundermann A, Marsh JW, Saul MI, Shutt KA, Pacey M, Mustapha MM, Harrison LH, Dubrawski A. Miller JK, et al. Among authors: chen j. J Biomed Inform. 2019 Mar;91:103126. doi: 10.1016/j.jbi.2019.103126. Epub 2019 Feb 13. J Biomed Inform. 2019. PMID: 30771483 Free PMC article.
Automated data mining of the electronic health record for investigation of healthcare-associated outbreaks.
Sundermann AJ, Miller JK, Marsh JW, Saul MI, Shutt KA, Pacey M, Mustapha MM, Ayres A, Pasculle AW, Chen J, Snyder GM, Dubrawski AW, Harrison LH. Sundermann AJ, et al. Among authors: chen j. Infect Control Hosp Epidemiol. 2019 Mar;40(3):314-319. doi: 10.1017/ice.2018.343. Epub 2019 Feb 18. Infect Control Hosp Epidemiol. 2019. PMID: 30773168 Free PMC article.
Outbreak of Pseudomonas aeruginosa Infections from a Contaminated Gastroscope Detected by Whole Genome Sequencing Surveillance.
Sundermann AJ, Chen J, Miller JK, Saul MI, Shutt KA, Griffith MP, Mustapha MM, Ezeonwuka C, Waggle K, Srinivasa V, Kumar P, Pasculle AW, Ayres AM, Snyder GM, Cooper VS, Van Tyne D, Marsh JW, Dubrawski AW, Harrison LH. Sundermann AJ, et al. Among authors: chen j. Clin Infect Dis. 2021 Aug 2;73(3):e638-e642. doi: 10.1093/cid/ciaa1887. Clin Infect Dis. 2021. PMID: 33367518 Free PMC article.
Whole-Genome Sequencing Surveillance and Machine Learning of the Electronic Health Record for Enhanced Healthcare Outbreak Detection.
Sundermann AJ, Chen J, Kumar P, Ayres AM, Cho ST, Ezeonwuka C, Griffith MP, Miller JK, Mustapha MM, Pasculle AW, Saul MI, Shutt KA, Srinivasa V, Waggle K, Snyder DJ, Cooper VS, Van Tyne D, Snyder GM, Marsh JW, Dubrawski A, Roberts MS, Harrison LH. Sundermann AJ, et al. Among authors: chen j. Clin Infect Dis. 2022 Aug 31;75(3):476-482. doi: 10.1093/cid/ciab946. Clin Infect Dis. 2022. PMID: 34791136 Free PMC article.
Whole-genome sequencing surveillance and machine learning for healthcare outbreak detection and investigation: A systematic review and summary.
Sundermann AJ, Chen J, Miller JK, Martin EM, Snyder GM, Van Tyne D, Marsh JW, Dubrawski A, Harrison LH. Sundermann AJ, et al. Among authors: chen j. Antimicrob Steward Healthc Epidemiol. 2022 Jun 13;2(1):e91. doi: 10.1017/ash.2021.241. eCollection 2022. Antimicrob Steward Healthc Epidemiol. 2022. PMID: 36483409 Free PMC article. Review.
Genomic sequencing surveillance of patients colonized with vancomycin-resistant Enterococcus (VRE) improves detection of hospital-associated transmission.
Sundermann AJ, Rangachar Srinivasa V, Mills EG, Griffith MP, Evans E, Chen J, Waggle KD, Snyder GM, Pless LL, Harrison LH, Van Tyne D. Sundermann AJ, et al. Among authors: chen j. medRxiv [Preprint]. 2024 May 3:2024.05.01.24306710. doi: 10.1101/2024.05.01.24306710. medRxiv. 2024. PMID: 38746387 Free PMC article. Preprint.
Biologically-targeted discovery-replication scan identifies G×G interaction in relation to risk of Barrett's esophagus and esophageal adenocarcinoma.
Yan L, He Q, Verma SP, Zhang X, Giel AS, Maj C, Graz K, Naderi E, Chen J, Ali MW, Gharahkhani P, Shu X, Offit K, Shah PM, Gerdes H, Molena D, Srivastava A, MacGregor S; BEACON Consortium, OCCAMS Consortium, Esophageal Cancer Consortium; Palles C, Thieme R, Vieth M, Gockel I, Vaughan TL, Schumacher J, Buas MF. Yan L, et al. Among authors: chen j. HGG Adv. 2025 Jan 3:100399. doi: 10.1016/j.xhgg.2025.100399. Online ahead of print. HGG Adv. 2025. PMID: 39755942
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