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Optimizing methods and dodging pitfalls in microbiome research.
Kim D, Hofstaedter CE, Zhao C, Mattei L, Tanes C, Clarke E, Lauder A, Sherrill-Mix S, Chehoud C, Kelsen J, Conrad M, Collman RG, Baldassano R, Bushman FD, Bittinger K. Kim D, et al. Microbiome. 2017 May 5;5(1):52. doi: 10.1186/s40168-017-0267-5. Microbiome. 2017. PMID: 28476139 Free PMC article. Review.
Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low-Microbial Content Samples.
Clarke EL, Lauder AP, Hofstaedter CE, Hwang Y, Fitzgerald AS, Imai I, Biernat W, Rękawiecki B, Majewska H, Dubaniewicz A, Litzky LA, Feldman MD, Bittinger K, Rossman MD, Patterson KC, Bushman FD, Collman RG. Clarke EL, et al. Am J Respir Crit Care Med. 2018 Jan 15;197(2):225-234. doi: 10.1164/rccm.201705-0891OC. Am J Respir Crit Care Med. 2018. PMID: 28846439 Free PMC article.
Upper Respiratory Dysbiosis with a Facultative-dominated Ecotype in Advanced Lung Disease and Dynamic Change after Lung Transplant.
Simon-Soro A, Sohn MB, McGinniss JE, Imai I, Brown MC, Knecht VR, Bailey A, Clarke EL, Cantu E, Li H, Bittinger K, Diamond JM, Christie JD, Bushman FD, Collman RG. Simon-Soro A, et al. Among authors: clarke el. Ann Am Thorac Soc. 2019 Nov;16(11):1383-1391. doi: 10.1513/AnnalsATS.201904-299OC. Ann Am Thorac Soc. 2019. PMID: 31415219 Free PMC article.
Molecular analysis of bacterial contamination on stethoscopes in an intensive care unit.
Knecht VR, McGinniss JE, Shankar HM, Clarke EL, Kelly BJ, Imai I, Fitzgerald AS, Bittinger K, Bushman FD, Collman RG. Knecht VR, et al. Among authors: clarke el. Infect Control Hosp Epidemiol. 2019 Feb;40(2):171-177. doi: 10.1017/ice.2018.319. Epub 2018 Dec 12. Infect Control Hosp Epidemiol. 2019. PMID: 30560753 Free PMC article.
T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency.
Clarke EL, Connell AJ, Six E, Kadry NA, Abbas AA, Hwang Y, Everett JK, Hofstaedter CE, Marsh R, Armant M, Kelsen J, Notarangelo LD, Collman RG, Hacein-Bey-Abina S, Kohn DB, Cavazzana M, Fischer A, Williams DA, Pai SY, Bushman FD. Clarke EL, et al. Genome Med. 2018 Sep 28;10(1):70. doi: 10.1186/s13073-018-0580-z. Genome Med. 2018. PMID: 30261899 Free PMC article.
42 results