Carvalho PC - Search Results

1

A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics.

Santos MDM, Lima DB, Silva ARF, Kurt LU, Clasen MA, Pinto AFM, Moresco JJ, Yates JR 3rd, Aquino P, Barbosa VC, Fischer JSG, Carvalho PC. Santos MDM, et al. Among authors: carvalho pc. J Proteomics. 2019 Jun 30;202:103371. doi: 10.1016/j.jprot.2019.04.021. Epub 2019 Apr 26. J Proteomics. 2019. PMID: 31034900

2

Identifying differences in protein expression levels by spectral counting and feature selection.

Carvalho PC, Hewel J, Barbosa VC, Yates JR 3rd. Carvalho PC, et al. Genet Mol Res. 2008 Apr 15;7(2):342-56. doi: 10.4238/vol7-2gmr426. Genet Mol Res. 2008. PMID: 18551400 Free PMC article.

3

PatternLab for proteomics: a tool for differential shotgun proteomics.

Carvalho PC, Fischer JS, Chen EI, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. BMC Bioinformatics. 2008 Jul 21;9:316. doi: 10.1186/1471-2105-9-316. BMC Bioinformatics. 2008. PMID: 18644148 Free PMC article.

4

Caititu: a tool to graphically represent peptide sequence coverage and domain distribution.

Carvalho PC, Junqueira M, Valente RH, Domont GB. Carvalho PC, et al. J Proteomics. 2008 Oct 7;71(4):486-9. doi: 10.1016/j.jprot.2008.06.015. Epub 2008 Jul 16. J Proteomics. 2008. PMID: 18678288

5

Charge prediction machine: tool for inferring precursor charge states of electron transfer dissociation tandem mass spectra.

Carvalho PC, Cociorva D, Wong CC, Carvalho Mda G, Barbosa VC, Yates JR 3rd. Carvalho PC, et al. Among authors: carvalho mda g. Anal Chem. 2009 Mar 1;81(5):1996-2003. doi: 10.1021/ac8025288. Anal Chem. 2009. PMID: 19203245 Free PMC article.

6

GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data.

Carvalho PC, Fischer JS, Chen EI, Domont GB, Carvalho MG, Degrave WM, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. Among authors: carvalho mg. Proteome Sci. 2009 Feb 24;7:6. doi: 10.1186/1477-5956-7-6. Proteome Sci. 2009. PMID: 19239707 Free PMC article.

7

YADA: a tool for taking the most out of high-resolution spectra.

Carvalho PC, Xu T, Han X, Cociorva D, Barbosa VC, Yates JR 3rd. Carvalho PC, et al. Bioinformatics. 2009 Oct 15;25(20):2734-6. doi: 10.1093/bioinformatics/btp489. Epub 2009 Aug 14. Bioinformatics. 2009. PMID: 19684088 Free PMC article.

8

PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis.

Nishimura N, Sarkeshik A, Nito K, Park SY, Wang A, Carvalho PC, Lee S, Caddell DF, Cutler SR, Chory J, Yates JR, Schroeder JI. Nishimura N, et al. Among authors: carvalho pc. Plant J. 2010 Jan;61(2):290-9. doi: 10.1111/j.1365-313X.2009.04054.x. Epub 2009 Oct 26. Plant J. 2010. PMID: 19874541 Free PMC article.

9

Dynamic proteomic overview of glioblastoma cells (A172) exposed to perillyl alcohol.

Fischer Jde S, Liao L, Carvalho PC, Barbosa VC, Domont GB, Carvalho Mda G, Yates JR 3rd. Fischer Jde S, et al. Among authors: carvalho pc, carvalho mda g. J Proteomics. 2010 Mar 10;73(5):1018-27. doi: 10.1016/j.jprot.2010.01.003. Epub 2010 Jan 18. J Proteomics. 2010. PMID: 20083244 Free PMC article.

10

XDIA: improving on the label-free data-independent analysis.

Carvalho PC, Han X, Xu T, Cociorva D, Carvalho Mda G, Barbosa VC, Yates JR 3rd. Carvalho PC, et al. Among authors: carvalho mda g. Bioinformatics. 2010 Mar 15;26(6):847-8. doi: 10.1093/bioinformatics/btq031. Epub 2010 Jan 26. Bioinformatics. 2010. PMID: 20106817 Free PMC article.

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