Smith AI - Search Results

1

iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.

Chen Z, Zhao P, Li F, Marquez-Lago TT, Leier A, Revote J, Zhu Y, Powell DR, Akutsu T, Webb GI, Chou KC, Smith AI, Daly RJ, Li J, Song J. Chen Z, et al. Among authors: smith ai. Brief Bioinform. 2020 May 21;21(3):1047-1057. doi: 10.1093/bib/bbz041. Brief Bioinform. 2020. PMID: 31067315

2

A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction.

Mei S, Li F, Leier A, Marquez-Lago TT, Giam K, Croft NP, Akutsu T, Smith AI, Li J, Rossjohn J, Purcell AW, Song J. Mei S, et al. Among authors: smith ai. Brief Bioinform. 2020 Jul 15;21(4):1119-1135. doi: 10.1093/bib/bbz051. Brief Bioinform. 2020. PMID: 31204427 Free PMC article. Review.

3

PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins.

Zhang Y, Yu S, Xie R, Li J, Leier A, Marquez-Lago TT, Akutsu T, Smith AI, Ge Z, Wang J, Lithgow T, Song J. Zhang Y, et al. Among authors: smith ai. Bioinformatics. 2020 Feb 1;36(3):704-712. doi: 10.1093/bioinformatics/btz629. Bioinformatics. 2020. PMID: 31393553

4

DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites.

Li F, Chen J, Leier A, Marquez-Lago T, Liu Q, Wang Y, Revote J, Smith AI, Akutsu T, Webb GI, Kurgan L, Song J. Li F, et al. Among authors: smith ai. Bioinformatics. 2020 Feb 15;36(4):1057-1065. doi: 10.1093/bioinformatics/btz721. Bioinformatics. 2020. PMID: 31566664 Free PMC article.

5

Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences.

Chen Z, Zhao P, Li F, Wang Y, Smith AI, Webb GI, Akutsu T, Baggag A, Bensmail H, Song J. Chen Z, et al. Among authors: smith ai. Brief Bioinform. 2020 Sep 25;21(5):1676-1696. doi: 10.1093/bib/bbz112. Brief Bioinform. 2020. PMID: 31714956 Review.

6

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences.

Chen Z, Zhao P, Li F, Leier A, Marquez-Lago TT, Wang Y, Webb GI, Smith AI, Daly RJ, Chou KC, Song J. Chen Z, et al. Among authors: smith ai. Bioinformatics. 2018 Jul 15;34(14):2499-2502. doi: 10.1093/bioinformatics/bty140. Bioinformatics. 2018. PMID: 29528364 Free PMC article.

7

PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact.

Li F, Fan C, Marquez-Lago TT, Leier A, Revote J, Jia C, Zhu Y, Smith AI, Webb GI, Liu Q, Wei L, Li J, Song J. Li F, et al. Among authors: smith ai. Brief Bioinform. 2020 May 21;21(3):1069-1079. doi: 10.1093/bib/bbz050. Brief Bioinform. 2020. PMID: 31161204 Free PMC article.

8

Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information.

Li F, Leier A, Liu Q, Wang Y, Xiang D, Akutsu T, Webb GI, Smith AI, Marquez-Lago T, Li J, Song J. Li F, et al. Among authors: smith ai. Genomics Proteomics Bioinformatics. 2020 Feb;18(1):52-64. doi: 10.1016/j.gpb.2019.08.002. Epub 2020 May 12. Genomics Proteomics Bioinformatics. 2020. PMID: 32413515 Free PMC article.

9

A Deep Learning-Based Method for Identification of Bacteriophage-Host Interaction.

Li M, Wang Y, Li F, Zhao Y, Liu M, Zhang S, Bin Y, Smith AI, Webb GI, Li J, Song J, Xia J. Li M, et al. Among authors: smith ai. IEEE/ACM Trans Comput Biol Bioinform. 2021 Sep-Oct;18(5):1801-1810. doi: 10.1109/TCBB.2020.3017386. Epub 2021 Oct 7. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 32813660 Free PMC article.

10

Morphine decreases LH secretion in ovariectomized ewes only after steroid priming and not by direct pituitary action.

Horton RJ, Li JY, Cummins JT, Smith AI, Shen PJ, Clarke IJ. Horton RJ, et al. Among authors: smith ai. Neuroendocrinology. 1990 Dec;52(6):612-7. doi: 10.1159/000125653. Neuroendocrinology. 1990. PMID: 2126611

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