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Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.
Gessulat S, Schmidt T, Zolg DP, Samaras P, Schnatbaum K, Zerweck J, Knaute T, Rechenberger J, Delanghe B, Huhmer A, Reimer U, Ehrlich HC, Aiche S, Kuster B, Wilhelm M. Gessulat S, et al. Among authors: schnatbaum k. Nat Methods. 2019 Jun;16(6):509-518. doi: 10.1038/s41592-019-0426-7. Epub 2019 May 27. Nat Methods. 2019. PMID: 31133760
Mass-spectrometry-based draft of the human proteome.
Wilhelm M, Schlegl J, Hahne H, Gholami AM, Lieberenz M, Savitski MM, Ziegler E, Butzmann L, Gessulat S, Marx H, Mathieson T, Lemeer S, Schnatbaum K, Reimer U, Wenschuh H, Mollenhauer M, Slotta-Huspenina J, Boese JH, Bantscheff M, Gerstmair A, Faerber F, Kuster B. Wilhelm M, et al. Among authors: schnatbaum k. Nature. 2014 May 29;509(7502):582-7. doi: 10.1038/nature13319. Nature. 2014. PMID: 24870543
Building ProteomeTools based on a complete synthetic human proteome.
Zolg DP, Wilhelm M, Schnatbaum K, Zerweck J, Knaute T, Delanghe B, Bailey DJ, Gessulat S, Ehrlich HC, Weininger M, Yu P, Schlegl J, Kramer K, Schmidt T, Kusebauch U, Deutsch EW, Aebersold R, Moritz RL, Wenschuh H, Moehring T, Aiche S, Huhmer A, Reimer U, Kuster B. Zolg DP, et al. Among authors: schnatbaum k. Nat Methods. 2017 Mar;14(3):259-262. doi: 10.1038/nmeth.4153. Epub 2017 Jan 30. Nat Methods. 2017. PMID: 28135259 Free PMC article.
Mining the Human Tissue Proteome for Protein Citrullination.
Lee CY, Wang D, Wilhelm M, Zolg DP, Schmidt T, Schnatbaum K, Reimer U, Pontén F, Uhlén M, Hahne H, Kuster B. Lee CY, et al. Among authors: schnatbaum k. Mol Cell Proteomics. 2018 Jul;17(7):1378-1391. doi: 10.1074/mcp.RA118.000696. Epub 2018 Apr 2. Mol Cell Proteomics. 2018. PMID: 29610271 Free PMC article.
ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides.
Zolg DP, Wilhelm M, Schmidt T, Médard G, Zerweck J, Knaute T, Wenschuh H, Reimer U, Schnatbaum K, Kuster B. Zolg DP, et al. Among authors: schnatbaum k. Mol Cell Proteomics. 2018 Sep;17(9):1850-1863. doi: 10.1074/mcp.TIR118.000783. Epub 2018 May 29. Mol Cell Proteomics. 2018. PMID: 29848782 Free PMC article.
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues.
Wang D, Eraslan B, Wieland T, Hallström B, Hopf T, Zolg DP, Zecha J, Asplund A, Li LH, Meng C, Frejno M, Schmidt T, Schnatbaum K, Wilhelm M, Ponten F, Uhlen M, Gagneur J, Hahne H, Kuster B. Wang D, et al. Among authors: schnatbaum k. Mol Syst Biol. 2019 Feb 18;15(2):e8503. doi: 10.15252/msb.20188503. Mol Syst Biol. 2019. PMID: 30777892 Free PMC article.
New Approaches for Absolute Quantification of Stable-Isotope-Labeled Peptide Standards for Targeted Proteomics Based on a UV Active Tag.
Schnatbaum K, Solis-Mezarino V, Pokrovsky D, Schäfer F, Nagl D, Hornberger L, Zerweck J, Knaute T, Avramova-Nehmer J, Schutkowski M, Hornung V, Wenschuh H, Völker-Albert MC, Imhof A, Reimer U. Schnatbaum K, et al. Proteomics. 2020 May;20(10):e2000007. doi: 10.1002/pmic.202000007. Epub 2020 May 20. Proteomics. 2020. PMID: 32267065
Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing.
Zecha J, Lee CY, Bayer FP, Meng C, Grass V, Zerweck J, Schnatbaum K, Michler T, Pichlmair A, Ludwig C, Kuster B. Zecha J, et al. Among authors: schnatbaum k. Mol Cell Proteomics. 2020 Sep;19(9):1503-1522. doi: 10.1074/mcp.RA120.002164. Epub 2020 Jun 26. Mol Cell Proteomics. 2020. PMID: 32591346 Free PMC article.
28 results