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Author Correction: scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells.
Chen JP, Diekmann C, Wu H, Chen C, Della Chiara G, Berrino E, Georgiadis KL, Bouwman BAM, Virdi M, Harbers L, Bellomo SE, Marchiò C, Bienko M, Crosetto N. Chen JP, et al. Among authors: bouwman bam. Nat Commun. 2024 Apr 22;15(1):3390. doi: 10.1038/s41467-024-47535-7. Nat Commun. 2024. PMID: 38649373 Free PMC article. No abstract available.
XPF interacts with TOP2B for R-loop processing and DNA looping on actively transcribed genes.
Chatzinikolaou G, Stratigi K, Siametis A, Goulielmaki E, Akalestou-Clocher A, Tsamardinos I, Topalis P, Austin C, Bouwman BAM, Crosetto N, Altmüller J, Garinis GA. Chatzinikolaou G, et al. Among authors: bouwman bam. Sci Adv. 2023 Nov 10;9(45):eadi2095. doi: 10.1126/sciadv.adi2095. Epub 2023 Nov 8. Sci Adv. 2023. PMID: 37939182 Free PMC article.
The era of 3D and spatial genomics.
Bouwman BAM, Crosetto N, Bienko M. Bouwman BAM, et al. Trends Genet. 2022 Oct;38(10):1062-1075. doi: 10.1016/j.tig.2022.05.010. Epub 2022 Jun 6. Trends Genet. 2022. PMID: 35680466 Free article. Review.
RNA gradients: Shapers of 3D genome architecture.
Bouwman BAM, Crosetto N, Bienko M. Bouwman BAM, et al. Curr Opin Cell Biol. 2022 Feb;74:7-12. doi: 10.1016/j.ceb.2021.12.001. Epub 2022 Jan 5. Curr Opin Cell Biol. 2022. PMID: 34998095 Free article. Review.
Genome-wide detection of DNA double-strand breaks by in-suspension BLISS.
Bouwman BAM, Agostini F, Garnerone S, Petrosino G, Gothe HJ, Sayols S, Moor AE, Itzkovitz S, Bienko M, Roukos V, Crosetto N. Bouwman BAM, et al. Nat Protoc. 2020 Dec;15(12):3894-3941. doi: 10.1038/s41596-020-0397-2. Epub 2020 Nov 2. Nat Protoc. 2020. PMID: 33139954
Colibactin DNA-damage signature indicates mutational impact in colorectal cancer.
Dziubańska-Kusibab PJ, Berger H, Battistini F, Bouwman BAM, Iftekhar A, Katainen R, Cajuso T, Crosetto N, Orozco M, Aaltonen LA, Meyer TF. Dziubańska-Kusibab PJ, et al. Among authors: bouwman bam. Nat Med. 2020 Jul;26(7):1063-1069. doi: 10.1038/s41591-020-0908-2. Epub 2020 Jun 1. Nat Med. 2020. PMID: 32483361
Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies.
Vermeulen C, Allahyar A, Bouwman BAM, Krijger PHL, Verstegen MJAM, Geeven G, Valdes-Quezada C, Renkens I, Straver R, Kloosterman WP, de Ridder J, de Laat W. Vermeulen C, et al. Among authors: bouwman bam. Nat Protoc. 2020 Feb;15(2):364-397. doi: 10.1038/s41596-019-0242-7. Epub 2020 Jan 13. Nat Protoc. 2020. PMID: 31932773
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