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Towards a standardized bioinformatics infrastructure for N- and O-glycomics.
Rojas-Macias MA, Mariethoz J, Andersson P, Jin C, Venkatakrishnan V, Aoki NP, Shinmachi D, Ashwood C, Madunic K, Zhang T, Miller RL, Horlacher O, Struwe WB, Watanabe Y, Okuda S, Levander F, Kolarich D, Rudd PM, Wuhrer M, Kettner C, Packer NH, Aoki-Kinoshita KF, Lisacek F, Karlsson NG. Rojas-Macias MA, et al. Among authors: kolarich d. Nat Commun. 2019 Jul 22;10(1):3275. doi: 10.1038/s41467-019-11131-x. Nat Commun. 2019. PMID: 31332201 Free PMC article. Review.
Mucin-type O-glycosylation--putting the pieces together.
Jensen PH, Kolarich D, Packer NH. Jensen PH, et al. Among authors: kolarich d. FEBS J. 2010 Jan;277(1):81-94. doi: 10.1111/j.1742-4658.2009.07429.x. Epub 2009 Nov 17. FEBS J. 2010. PMID: 19919547 Free article. Review.
Comparison of methods for profiling O-glycosylation: Human Proteome Organisation Human Disease Glycomics/Proteome Initiative multi-institutional study of IgA1.
Wada Y, Dell A, Haslam SM, Tissot B, Canis K, Azadi P, Bäckström M, Costello CE, Hansson GC, Hiki Y, Ishihara M, Ito H, Kakehi K, Karlsson N, Hayes CE, Kato K, Kawasaki N, Khoo KH, Kobayashi K, Kolarich D, Kondo A, Lebrilla C, Nakano M, Narimatsu H, Novak J, Novotny MV, Ohno E, Packer NH, Palaima E, Renfrow MB, Tajiri M, Thomsson KA, Yagi H, Yu SY, Taniguchi N. Wada Y, et al. Among authors: kolarich d. Mol Cell Proteomics. 2010 Apr;9(4):719-27. doi: 10.1074/mcp.M900450-MCP200. Epub 2009 Dec 28. Mol Cell Proteomics. 2010. PMID: 20038609 Free PMC article.
Liver membrane proteome glycosylation changes in mice bearing an extra-hepatic tumor.
Lee A, Chick JM, Kolarich D, Haynes PA, Robertson GR, Tsoli M, Jankova L, Clarke SJ, Packer NH, Baker MS. Lee A, et al. Among authors: kolarich d. Mol Cell Proteomics. 2011 Sep;10(9):M900538MCP200. doi: 10.1074/mcp.M900538-MCP200. Epub 2010 Feb 18. Mol Cell Proteomics. 2011. PMID: 20167946 Free PMC article.
Simultaneous glycan-peptide characterization using hydrophilic interaction chromatography and parallel fragmentation by CID, higher energy collisional dissociation, and electron transfer dissociation MS applied to the N-linked glycoproteome of Campylobacter jejuni.
Scott NE, Parker BL, Connolly AM, Paulech J, Edwards AV, Crossett B, Falconer L, Kolarich D, Djordjevic SP, Højrup P, Packer NH, Larsen MR, Cordwell SJ. Scott NE, et al. Among authors: kolarich d. Mol Cell Proteomics. 2011 Feb;10(2):M000031-MCP201. doi: 10.1074/mcp.M000031-MCP201. Epub 2010 Apr 1. Mol Cell Proteomics. 2011. PMID: 20360033 Free PMC article.
Quantitative N-linked glycoproteomics of myocardial ischemia and reperfusion injury reveals early remodeling in the extracellular environment.
Parker BL, Palmisano G, Edwards AV, White MY, Engholm-Keller K, Lee A, Scott NE, Kolarich D, Hambly BD, Packer NH, Larsen MR, Cordwell SJ. Parker BL, et al. Among authors: kolarich d. Mol Cell Proteomics. 2011 Aug;10(8):M110.006833. doi: 10.1074/mcp.M110.006833. Epub 2011 Mar 25. Mol Cell Proteomics. 2011. PMID: 21441315 Free PMC article.
130 results