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Page 1
Worldwide human mitochondrial haplogroup distribution from urban sewage.
Pipek OA, Medgyes-Horváth A, Dobos L, Stéger J, Szalai-Gindl J, Visontai D, Kaas RS, Koopmans M, Hendriksen RS, Aarestrup FM, Csabai I. Pipek OA, et al. Among authors: koopmans m. Sci Rep. 2019 Aug 12;9(1):11624. doi: 10.1038/s41598-019-48093-5. Sci Rep. 2019. PMID: 31406241 Free PMC article.
Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response.
Aarestrup FM, Brown EW, Detter C, Gerner-Smidt P, Gilmour MW, Harmsen D, Hendriksen RS, Hewson R, Heymann DL, Johansson K, Ijaz K, Keim PS, Koopmans M, Kroneman A, Lo Fo Wong D, Lund O, Palm D, Sawanpanyalert P, Sobel J, Schlundt J. Aarestrup FM, et al. Among authors: koopmans m. Emerg Infect Dis. 2012 Nov;18(11):e1. doi: 10.3201/eid/1811.120453. Emerg Infect Dis. 2012. PMID: 23092707 Free PMC article.
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.
Hendriksen RS, Munk P, Njage P, van Bunnik B, McNally L, Lukjancenko O, Röder T, Nieuwenhuijse D, Pedersen SK, Kjeldgaard J, Kaas RS, Clausen PTLC, Vogt JK, Leekitcharoenphon P, van de Schans MGM, Zuidema T, de Roda Husman AM, Rasmussen S, Petersen B; Global Sewage Surveillance project consortium; Amid C, Cochrane G, Sicheritz-Ponten T, Schmitt H, Alvarez JRM, Aidara-Kane A, Pamp SJ, Lund O, Hald T, Woolhouse M, Koopmans MP, Vigre H, Petersen TN, Aarestrup FM. Hendriksen RS, et al. Among authors: koopmans mp. Nat Commun. 2019 Mar 8;10(1):1124. doi: 10.1038/s41467-019-08853-3. Nat Commun. 2019. PMID: 30850636 Free PMC article.
Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets.
Brinkmann A, Andrusch A, Belka A, Wylezich C, Höper D, Pohlmann A, Nordahl Petersen T, Lucas P, Blanchard Y, Papa A, Melidou A, Oude Munnink BB, Matthijnssens J, Deboutte W, Ellis RJ, Hansmann F, Baumgärtner W, van der Vries E, Osterhaus A, Camma C, Mangone I, Lorusso A, Marcacci M, Nunes A, Pinto M, Borges V, Kroneman A, Schmitz D, Corman VM, Drosten C, Jones TC, Hendriksen RS, Aarestrup FM, Koopmans M, Beer M, Nitsche A. Brinkmann A, et al. Among authors: koopmans m. J Clin Microbiol. 2019 Jul 26;57(8):e00466-19. doi: 10.1128/JCM.00466-19. Print 2019 Aug. J Clin Microbiol. 2019. PMID: 31167846 Free PMC article.
The COMPARE Data Hubs.
Amid C, Pakseresht N, Silvester N, Jayathilaka S, Lund O, Dynovski LD, Pataki BÁ, Visontai D, Xavier BB, Alako BTF, Belka A, Cisneros JLB, Cotten M, Haringhuizen GB, Harrison PW, Höper D, Holt S, Hundahl C, Hussein A, Kaas RS, Liu X, Leinonen R, Malhotra-Kumar S, Nieuwenhuijse DF, Rahman N, Dos S Ribeiro C, Skiby JE, Schmitz D, Stéger J, Szalai-Gindl JM, Thomsen MCF, Cacciò SM, Csabai I, Kroneman A, Koopmans M, Aarestrup F, Cochrane G. Amid C, et al. Among authors: koopmans m. Database (Oxford). 2019 Jan 1;2019:baz136. doi: 10.1093/database/baz136. Database (Oxford). 2019. PMID: 31868882 Free PMC article.
Accelerating surveillance and research of antimicrobial resistance - an online repository for sharing of antimicrobial susceptibility data associated with whole-genome sequences.
Matamoros S, Hendriksen RS, Pataki BÁ, Pakseresht N, Rossello M, Silvester N, Amid C, Aarestrup FM, Koopmans M, Cochrane G, Csabai I, Lund O, Schultsz C, The Compare Ml-Amr Group. Matamoros S, et al. Among authors: koopmans m. Microb Genom. 2020 May;6(5):e000342. doi: 10.1099/mgen.0.000342. Epub 2020 Mar 30. Microb Genom. 2020. PMID: 32255760 Free PMC article.
Setting a baseline for global urban virome surveillance in sewage.
Nieuwenhuijse DF, Oude Munnink BB, Phan MVT; Global Sewage Surveillance project consortium; Munk P, Venkatakrishnan S, Aarestrup FM, Cotten M, Koopmans MPG. Nieuwenhuijse DF, et al. Among authors: koopmans mpg. Sci Rep. 2020 Aug 13;10(1):13748. doi: 10.1038/s41598-020-69869-0. Sci Rep. 2020. PMID: 32792677 Free PMC article.
Author Correction: Setting a baseline for global urban virome surveillance in sewage.
Nieuwenhuijse DF, Oude Munnink BB, Phan MVT; Global Sewage Surveillance project consortium; Munk P, Venkatakrishnan S, Aarestrup FM, Cotten M, Koopmans MPG. Nieuwenhuijse DF, et al. Among authors: koopmans mpg. Sci Rep. 2021 Aug 25;11(1):17446. doi: 10.1038/s41598-021-95934-3. Sci Rep. 2021. PMID: 34433858 Free PMC article. No abstract available.
Pandemics- One Health preparedness for the next.
Aarestrup FM, Bonten M, Koopmans M. Aarestrup FM, et al. Among authors: koopmans m. Lancet Reg Health Eur. 2021 Oct;9:100210. doi: 10.1016/j.lanepe.2021.100210. Epub 2021 Oct 7. Lancet Reg Health Eur. 2021. PMID: 34642673 Free PMC article. Review.
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance.
Munk P, Brinch C, Møller FD, Petersen TN, Hendriksen RS, Seyfarth AM, Kjeldgaard JS, Svendsen CA, van Bunnik B, Berglund F; Global Sewage Surveillance Consortium; Larsson DGJ, Koopmans M, Woolhouse M, Aarestrup FM. Munk P, et al. Among authors: koopmans m. Nat Commun. 2022 Dec 1;13(1):7251. doi: 10.1038/s41467-022-34312-7. Nat Commun. 2022. PMID: 36456547 Free PMC article.
979 results