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Pheno-seq - linking visual features and gene expression in 3D cell culture systems.
Tirier SM, Park J, Preußer F, Amrhein L, Gu Z, Steiger S, Mallm JP, Krieger T, Waschow M, Eismann B, Gut M, Gut IG, Rippe K, Schlesner M, Theis F, Fuchs C, Ball CR, Glimm H, Eils R, Conrad C. Tirier SM, et al. Among authors: park j. Sci Rep. 2019 Aug 26;9(1):12367. doi: 10.1038/s41598-019-48771-4. Sci Rep. 2019. PMID: 31451731 Free PMC article.
RAS-pathway mutation patterns define epigenetic subclasses in juvenile myelomonocytic leukemia.
Lipka DB, Witte T, Toth R, Yang J, Wiesenfarth M, Nöllke P, Fischer A, Brocks D, Gu Z, Park J, Strahm B, Wlodarski M, Yoshimi A, Claus R, Lübbert M, Busch H, Boerries M, Hartmann M, Schönung M, Kilik U, Langstein J, Wierzbinska JA, Pabst C, Garg S, Catalá A, De Moerloose B, Dworzak M, Hasle H, Locatelli F, Masetti R, Schmugge M, Smith O, Stary J, Ussowicz M, van den Heuvel-Eibrink MM, Assenov Y, Schlesner M, Niemeyer C, Flotho C, Plass C. Lipka DB, et al. Among authors: park j. Nat Commun. 2017 Dec 19;8(1):2126. doi: 10.1038/s41467-017-02177-w. Nat Commun. 2017. PMID: 29259247 Free PMC article. Clinical Trial.
Web-based design and analysis tools for CRISPR base editing.
Hwang GH, Park J, Lim K, Kim S, Yu J, Yu E, Kim ST, Eils R, Kim JS, Bae S. Hwang GH, et al. Among authors: park j. BMC Bioinformatics. 2018 Dec 27;19(1):542. doi: 10.1186/s12859-018-2585-4. BMC Bioinformatics. 2018. PMID: 30587106 Free PMC article.
ShinyButchR: Interactive NMF-based decomposition workflow of genome-scale datasets.
Quintero A, Hübschmann D, Kurzawa N, Steinhauser S, Rentzsch P, Krämer S, Andresen C, Park J, Eils R, Schlesner M, Herrmann C. Quintero A, et al. Among authors: park j. Biol Methods Protoc. 2020 Oct 29;5(1):bpaa022. doi: 10.1093/biomethods/bpaa022. eCollection 2020. Biol Methods Protoc. 2020. PMID: 33376806 Free PMC article.
Functional States in Tumor-Initiating Cell Differentiation in Human Colorectal Cancer.
Zowada MK, Tirier SM, Dieter SM, Krieger TG, Oberlack A, Chua RL, Huerta M, Ten FW, Laaber K, Park J, Jechow K, Müller T, Kalxdorf M, Kriegsmann M, Kriegsmann K, Herbst F, Krijgsveld J, Schneider M, Eils R, Glimm H, Conrad C, Ball CR. Zowada MK, et al. Among authors: park j. Cancers (Basel). 2021 Mar 4;13(5):1097. doi: 10.3390/cancers13051097. Cancers (Basel). 2021. PMID: 33806447 Free PMC article.
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