Wick R - Search Results

1

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.

De Maio N, Shaw LP, Hubbard A, George S, Sanderson ND, Swann J, Wick R, AbuOun M, Stubberfield E, Hoosdally SJ, Crook DW, Peto TEA, Sheppard AE, Bailey MJ, Read DS, Anjum MF, Walker AS, Stoesser N, On Behalf Of The Rehab Consortium. De Maio N, et al. Among authors: wick r. Microb Genom. 2019 Sep;5(9):e000294. doi: 10.1099/mgen.0.000294. Epub 2019 Aug 30. Microb Genom. 2019. PMID: 31483244 Free PMC article.

2

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data.

Hawkey J, Hamidian M, Wick RR, Edwards DJ, Billman-Jacobe H, Hall RM, Holt KE. Hawkey J, et al. Among authors: wick rr. BMC Genomics. 2015 Sep 3;16(1):667. doi: 10.1186/s12864-015-1860-2. BMC Genomics. 2015. PMID: 26336060 Free PMC article.

3

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Wick RR, Judd LM, Gorrie CL, Holt KE. Wick RR, et al. PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun. PLoS Comput Biol. 2017. PMID: 28594827 Free PMC article.

4

Completing bacterial genome assemblies with multiplex MinION sequencing.

Wick RR, Judd LM, Gorrie CL, Holt KE. Wick RR, et al. Microb Genom. 2017 Sep 14;3(10):e000132. doi: 10.1099/mgen.0.000132. eCollection 2017 Oct. Microb Genom. 2017. PMID: 29177090 Free PMC article.

5

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection.

Hawkey J, Ascher DB, Judd LM, Wick RR, Kostoulias X, Cleland H, Spelman DW, Padiglione A, Peleg AY, Holt KE. Hawkey J, et al. Among authors: wick rr. Microb Genom. 2018 Mar;4(3):e000165. doi: 10.1099/mgen.0.000165. Epub 2018 Mar 16. Microb Genom. 2018. PMID: 29547094 Free PMC article.

6

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations.

Lam MMC, Wick RR, Wyres KL, Gorrie CL, Judd LM, Jenney AWJ, Brisse S, Holt KE. Lam MMC, et al. Among authors: wick rr. Microb Genom. 2018 Sep;4(9):e000196. doi: 10.1099/mgen.0.000196. Epub 2018 Jul 9. Microb Genom. 2018. PMID: 29985125 Free PMC article.

7

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.

Wick RR, Judd LM, Holt KE. Wick RR, et al. PLoS Comput Biol. 2018 Nov 20;14(11):e1006583. doi: 10.1371/journal.pcbi.1006583. eCollection 2018 Nov. PLoS Comput Biol. 2018. PMID: 30458005 Free PMC article.

8

Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1.

Hamidian M, Hawkey J, Wick R, Holt KE, Hall RM. Hamidian M, et al. Among authors: wick r. Microb Genom. 2019 Jan;5(1):e000242. doi: 10.1099/mgen.0.000242. Epub 2019 Jan 16. Microb Genom. 2019. PMID: 30648939 Free PMC article.

9

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clones 1 and 2.

Hamidian M, Wick RR, Hartstein RM, Judd LM, Holt KE, Hall RM. Hamidian M, et al. Among authors: wick rr. Microb Genom. 2019 Oct;5(10):e000298. doi: 10.1099/mgen.0.000298. Microb Genom. 2019. PMID: 31556867 Free PMC article.

10

Benchmarking of long-read assemblers for prokaryote whole genome sequencing.

Wick RR, Holt KE. Wick RR, et al. F1000Res. 2019 Dec 23;8:2138. doi: 10.12688/f1000research.21782.4. eCollection 2019. F1000Res. 2019. PMID: 31984131 Free PMC article.

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