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Automatic Identification of Individual rpoB Gene Mutations Responsible for Rifampin Resistance in Mycobacterium tuberculosis by Use of Melting Temperature Signatures Generated by the Xpert MTB/RIF Ultra Assay.
Cao Y, Parmar H, Simmons AM, Kale D, Tong K, Lieu D, Persing D, Kwiatkowski R, Alland D, Chakravorty S. Cao Y, et al. J Clin Microbiol. 2019 Dec 23;58(1):e00907-19. doi: 10.1128/JCM.00907-19. Print 2019 Dec 23. J Clin Microbiol. 2019. PMID: 31533985 Free PMC article.
The New Xpert MTB/RIF Ultra: Improving Detection of Mycobacterium tuberculosis and Resistance to Rifampin in an Assay Suitable for Point-of-Care Testing.
Chakravorty S, Simmons AM, Rowneki M, Parmar H, Cao Y, Ryan J, Banada PP, Deshpande S, Shenai S, Gall A, Glass J, Krieswirth B, Schumacher SG, Nabeta P, Tukvadze N, Rodrigues C, Skrahina A, Tagliani E, Cirillo DM, Davidow A, Denkinger CM, Persing D, Kwiatkowski R, Jones M, Alland D. Chakravorty S, et al. Among authors: cao y. mBio. 2017 Aug 29;8(4):e00812-17. doi: 10.1128/mBio.00812-17. mBio. 2017. PMID: 28851844 Free PMC article.
Xpert MTB/XDR: a 10-Color Reflex Assay Suitable for Point-of-Care Settings To Detect Isoniazid, Fluoroquinolone, and Second-Line-Injectable-Drug Resistance Directly from Mycobacterium tuberculosis-Positive Sputum.
Cao Y, Parmar H, Gaur RL, Lieu D, Raghunath S, Via N, Battaglia S, Cirillo DM, Denkinger C, Georghiou S, Kwiatkowski R, Persing D, Alland D, Chakravorty S. Cao Y, et al. J Clin Microbiol. 2021 Feb 18;59(3):e02314-20. doi: 10.1128/JCM.02314-20. Print 2021 Feb 18. J Clin Microbiol. 2021. PMID: 33298611 Free PMC article.
Analytical performance of the Xpert MTB/XDR® assay for tuberculosis and expanded resistance detection.
Georghiou SB, Penn-Nicholson A, de Vos M, Macé A, Syrmis MW, Jacob K, Mape A, Parmar H, Cao Y, Coulter C, Ruhwald M, Pandey SK, Schumacher SG, Denkinger CM. Georghiou SB, et al. Among authors: cao y. Diagn Microbiol Infect Dis. 2021 Sep;101(1):115397. doi: 10.1016/j.diagmicrobio.2021.115397. Epub 2021 Apr 20. Diagn Microbiol Infect Dis. 2021. PMID: 34130215 Free article.
Temporal Genomic Analysis of Homogeneous Tumor Models Reveals Key Regulators of Immune Evasion in Melanoma.
Cohen Shvefel S, Pai JA, Cao Y, Pal LR, Bartok O, Levy R, Zemanek MJ, Weller C, Herzog E, Yao W, Hiam-Galvez KJ, Cheng K, Yin Y, Du PP, Raposo CJ, Gumpert N, Welti M, Martínez Gómez JM, Sella F, Yakubovich E, Orr I, Ben-Dor S, Oren R, Fellus-Alyagor L, Golani O, Brenner OJ, Salame TM, Zerbib M, Goliand I, Ranmar D, Savchenko I, Ketrarou N, Schäffer AA, Dahan R, Levesque MP, Ruppin E, Satpathy AT, Samuels Y. Cohen Shvefel S, et al. Among authors: cao y. Cancer Discov. 2025 Jan 28:OF1-OF25. doi: 10.1158/2159-8290.CD-23-1422. Online ahead of print. Cancer Discov. 2025. PMID: 39873477
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