Li S - Search Results

1

SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data.

Zhang S, den Bakker HC, Li S, Chen J, Dinsmore BA, Lane C, Lauer AC, Fields PI, Deng X. Zhang S, et al. Among authors: li s. Appl Environ Microbiol. 2019 Nov 14;85(23):e01746-19. doi: 10.1128/AEM.01746-19. Print 2019 Dec 1. Appl Environ Microbiol. 2019. PMID: 31540993 Free PMC article.

2

Quasimetagenomics-Based and Real-Time-Sequencing-Aided Detection and Subtyping of Salmonella enterica from Food Samples.

Hyeon JY, Li S, Mann DA, Zhang S, Li Z, Chen Y, Deng X. Hyeon JY, et al. Among authors: li s, li z. Appl Environ Microbiol. 2018 Jan 31;84(4):e02340-17. doi: 10.1128/AEM.02340-17. Print 2018 Feb 15. Appl Environ Microbiol. 2018. PMID: 29196295 Free PMC article.

3

Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States.

Zhang S, Li S, Gu W, den Bakker H, Boxrud D, Taylor A, Roe C, Driebe E, Engelthaler DM, Allard M, Brown E, McDermott P, Zhao S, Bruce BB, Trees E, Fields PI, Deng X. Zhang S, et al. Among authors: li s. Emerg Infect Dis. 2019 Jan;25(1):82-91. doi: 10.3201/eid2501.180835. Emerg Infect Dis. 2019. PMID: 30561314 Free PMC article.

4

Implications of Mobile Genetic Elements for Salmonella enterica Single-Nucleotide Polymorphism Subtyping and Source Tracking Investigations.

Li S, Zhang S, Baert L, Jagadeesan B, Ngom-Bru C, Griswold T, Katz LS, Carleton HA, Deng X. Li S, et al. Appl Environ Microbiol. 2019 Nov 27;85(24):e01985-19. doi: 10.1128/AEM.01985-19. Print 2019 Dec 15. Appl Environ Microbiol. 2019. PMID: 31585993 Free PMC article.

5

Salmonella Serotyping; Comparison of the Traditional Method to a Microarray-Based Method and an in silico Platform Using Whole Genome Sequencing Data.

Diep B, Barretto C, Portmann AC, Fournier C, Karczmarek A, Voets G, Li S, Deng X, Klijn A. Diep B, et al. Among authors: li s. Front Microbiol. 2019 Nov 11;10:2554. doi: 10.3389/fmicb.2019.02554. eCollection 2019. Front Microbiol. 2019. PMID: 31781065 Free PMC article.

6

Evaluation of real-time nanopore sequencing for Salmonella serotype prediction.

Xu F, Ge C, Luo H, Li S, Wiedmann M, Deng X, Zhang G, Stevenson A, Baker RC, Tang S. Xu F, et al. Among authors: li s. Food Microbiol. 2020 Aug;89:103452. doi: 10.1016/j.fm.2020.103452. Epub 2020 Feb 5. Food Microbiol. 2020. PMID: 32138998 Free article.

7

Salmonella enterica and Escherichia coli in Wheat Flour: Detection and Serotyping by a Quasimetagenomic Approach Assisted by Magnetic Capture, Multiple-Displacement Amplification, and Real-Time Sequencing.

Forghani F, Li S, Zhang S, Mann DA, Deng X, den Bakker HC, Diez-Gonzalez F. Forghani F, et al. Among authors: li s. Appl Environ Microbiol. 2020 Jun 17;86(13):e00097-20. doi: 10.1128/AEM.00097-20. Print 2020 Jun 17. Appl Environ Microbiol. 2020. PMID: 32358002 Free PMC article.

8

Dissemination of multidrug-resistant Escherichia coli harboring the mobile colistin resistance gene mcr-1.1 on transmissible plasmids in the Mediterranean Sea.

Sourenian T, Mann D, Li S, Deng X, Jaafar H, Kassem II. Sourenian T, et al. Among authors: li s. J Glob Antimicrob Resist. 2020 Sep;22:84-86. doi: 10.1016/j.jgar.2020.05.007. Epub 2020 Jun 4. J Glob Antimicrob Resist. 2020. PMID: 32504844 Free article. No abstract available.

9

GC Content-Associated Sequencing Bias Caused by Library Preparation Method May Infrequently Affect Salmonella Serotype Prediction Using SeqSero2.

Li S, Zhang S, Deng X. Li S, et al. Appl Environ Microbiol. 2020 Sep 1;86(18):e00614-20. doi: 10.1128/AEM.00614-20. Print 2020 Sep 1. Appl Environ Microbiol. 2020. PMID: 32680856 Free PMC article. No abstract available.

10

Microbiome-Informed Food Safety and Quality: Longitudinal Consistency and Cross-Sectional Distinctiveness of Retail Chicken Breast Microbiomes.

Li S, Mann DA, Zhang S, Qi Y, Meinersmann RJ, Deng X. Li S, et al. mSystems. 2020 Sep 8;5(5):e00589-20. doi: 10.1128/mSystems.00589-20. mSystems. 2020. PMID: 32900871 Free PMC article.

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