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Genome sequence of the palaeopolyploid soybean.
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA. Schmutz J, et al. Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670. Nature. 2010. PMID: 20075913
Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs.
Hossain MS, Kawakatsu T, Kim KD, Zhang N, Nguyen CT, Khan SM, Batek JM, Joshi T, Schmutz J, Grimwood J, Schmitz RJ, Xu D, Jackson SA, Ecker JR, Stacey G. Hossain MS, et al. Among authors: schmutz j. New Phytol. 2017 Apr;214(2):808-819. doi: 10.1111/nph.14421. Epub 2017 Jan 20. New Phytol. 2017. PMID: 28106918 Free article.
The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data.
Perroud PF, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon-Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, Ponce de León I, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szövényi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA. Perroud PF, et al. Among authors: schmutz j. Plant J. 2018 Jul;95(1):168-182. doi: 10.1111/tpj.13940. Epub 2018 Jun 7. Plant J. 2018. PMID: 29681058 Free article.
Construction and comparison of three reference-quality genome assemblies for soybean.
Valliyodan B, Cannon SB, Bayer PE, Shu S, Brown AV, Ren L, Jenkins J, Chung CY, Chan TF, Daum CG, Plott C, Hastie A, Baruch K, Barry KW, Huang W, Patil G, Varshney RK, Hu H, Batley J, Yuan Y, Song Q, Stupar RM, Goodstein DM, Stacey G, Lam HM, Jackson SA, Schmutz J, Grimwood J, Edwards D, Nguyen HT. Valliyodan B, et al. Among authors: schmutz j. Plant J. 2019 Dec;100(5):1066-1082. doi: 10.1111/tpj.14500. Epub 2019 Oct 28. Plant J. 2019. PMID: 31433882 Free article.
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.
Sreedasyam A, Plott C, Hossain MS, Lovell JT, Grimwood J, Jenkins JW, Daum C, Barry K, Carlson J, Shu S, Phillips J, Amirebrahimi M, Zane M, Wang M, Goodstein D, Haas FB, Hiss M, Perroud PF, Jawdy SS, Yang Y, Hu R, Johnson J, Kropat J, Gallaher SD, Lipzen A, Shakirov EV, Weng X, Torres-Jerez I, Weers B, Conde D, Pappas MR, Liu L, Muchlinski A, Jiang H, Shyu C, Huang P, Sebastian J, Laiben C, Medlin A, Carey S, Carrell AA, Chen JG, Perales M, Swaminathan K, Allona I, Grattapaglia D, Cooper EA, Tholl D, Vogel JP, Weston DJ, Yang X, Brutnell TP, Kellogg EA, Baxter I, Udvardi M, Tang Y, Mockler TC, Juenger TE, Mullet J, Rensing SA, Tuskan GA, Merchant SS, Stacey G, Schmutz J. Sreedasyam A, et al. Among authors: schmutz j. Nucleic Acids Res. 2023 Sep 8;51(16):8383-8401. doi: 10.1093/nar/gkad616. Nucleic Acids Res. 2023. PMID: 37526283 Free PMC article.
Soybean genomics research community strategic plan: A vision for 2024-2028.
Stupar RM, Locke AM, Allen DK, Stacey MG, Ma J, Weiss J, Nelson RT, Hudson ME, Joshi T, Li Z, Song Q, Jedlicka JR, MacIntosh GC, Grant D, Parrott WA, Clemente TE, Stacey G, An YC, Aponte-Rivera J, Bhattacharyya MK, Baxter I, Bilyeu KD, Campbell JD, Cannon SB, Clough SJ, Curtin SJ, Diers BW, Dorrance AE, Gillman JD, Graef GL, Hancock CN, Hudson KA, Hyten DL, Kachroo A, Koebernick J, Libault M, Lorenz AJ, Mahan AL, Massman JM, McGinn M, Meksem K, Okamuro JK, Pedley KF, Rainey KM, Scaboo AM, Schmutz J, Song BH, Steinbrenner AD, Stewart-Brown BB, Toth K, Wang D, Weaver L, Zhang B, Graham MA, O'Rourke JA. Stupar RM, et al. Among authors: schmutz j. Plant Genome. 2024 Dec;17(4):e20516. doi: 10.1002/tpg2.20516. Epub 2024 Nov 21. Plant Genome. 2024. PMID: 39572930 Free PMC article.
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization.
McCormick RF, Truong SK, Sreedasyam A, Jenkins J, Shu S, Sims D, Kennedy M, Amirebrahimi M, Weers BD, McKinley B, Mattison A, Morishige DT, Grimwood J, Schmutz J, Mullet JE. McCormick RF, et al. Among authors: schmutz j. Plant J. 2018 Jan;93(2):338-354. doi: 10.1111/tpj.13781. Epub 2017 Dec 28. Plant J. 2018. PMID: 29161754 Free article.
910 results