Mier P - Search Results

1

Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases.

Tørresen OK, Star B, Mier P, Andrade-Navarro MA, Bateman A, Jarnot P, Gruca A, Grynberg M, Kajava AV, Promponas VJ, Anisimova M, Jakobsen KS, Linke D. Tørresen OK, et al. Among authors: mier p. Nucleic Acids Res. 2019 Dec 2;47(21):10994-11006. doi: 10.1093/nar/gkz841. Nucleic Acids Res. 2019. PMID: 31584084 Free PMC article. Review.

2

orthoFind Facilitates the Discovery of Homologous and Orthologous Proteins.

Mier P, Andrade-Navarro MA, Pérez-Pulido AJ. Mier P, et al. PLoS One. 2015 Dec 1;10(12):e0143906. doi: 10.1371/journal.pone.0143906. eCollection 2015. PLoS One. 2015. PMID: 26624019 Free PMC article.

3

FastaHerder2: Four Ways to Research Protein Function and Evolution with Clustering and Clustered Databases.

Mier P, Andrade-Navarro MA. Mier P, et al. J Comput Biol. 2016 Apr;23(4):270-8. doi: 10.1089/cmb.2015.0191. Epub 2016 Feb 1. J Comput Biol. 2016. PMID: 26828375

4

CABRA: Cluster and Annotate Blast Results Algorithm.

Mier P, Andrade-Navarro MA. Mier P, et al. BMC Res Notes. 2016 Apr 30;9:253. doi: 10.1186/s13104-016-2062-y. BMC Res Notes. 2016. PMID: 27129717 Free PMC article.

5

Efficient embedding of complex networks to hyperbolic space via their Laplacian.

Alanis-Lobato G, Mier P, Andrade-Navarro MA. Alanis-Lobato G, et al. Among authors: mier p. Sci Rep. 2016 Jul 22;6:30108. doi: 10.1038/srep30108. Sci Rep. 2016. PMID: 27445157 Free PMC article.

6

Protein-protein interactions can be predicted using coiled coil co-evolution patterns.

Mier P, Alanis-Lobato G, Andrade-Navarro MA. Mier P, et al. J Theor Biol. 2017 Jan 7;412:198-203. doi: 10.1016/j.jtbi.2016.11.001. Epub 2016 Nov 7. J Theor Biol. 2017. PMID: 27832945 Free article.

7

dAPE: a web server to detect homorepeats and follow their evolution.

Mier P, Andrade-Navarro MA. Mier P, et al. Bioinformatics. 2017 Apr 15;33(8):1221-1223. doi: 10.1093/bioinformatics/btw790. Bioinformatics. 2017. PMID: 28031183 Free PMC article.

8

Reading the Evolution of Compartmentalization in the Ribosome Assembly Toolbox: The YRG Protein Family.

Mier P, Pérez-Pulido AJ, Reynaud EG, Andrade-Navarro MA. Mier P, et al. PLoS One. 2017 Jan 10;12(1):e0169750. doi: 10.1371/journal.pone.0169750. eCollection 2017. PLoS One. 2017. PMID: 28072865 Free PMC article.

9

Context characterization of amino acid homorepeats using evolution, position, and order.

Mier P, Alanis-Lobato G, Andrade-Navarro MA. Mier P, et al. Proteins. 2017 Apr;85(4):709-719. doi: 10.1002/prot.25250. Epub 2017 Feb 6. Proteins. 2017. PMID: 28097686

10

The Protein Structure Context of PolyQ Regions.

Totzeck F, Andrade-Navarro MA, Mier P. Totzeck F, et al. Among authors: mier p. PLoS One. 2017 Jan 26;12(1):e0170801. doi: 10.1371/journal.pone.0170801. eCollection 2017. PLoS One. 2017. PMID: 28125688 Free PMC article.

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