Ji Z - Search Results

1

TCF-1-Centered Transcriptional Network Drives an Effector versus Exhausted CD8 T Cell-Fate Decision.

Chen Z, Ji Z, Ngiow SF, Manne S, Cai Z, Huang AC, Johnson J, Staupe RP, Bengsch B, Xu C, Yu S, Kurachi M, Herati RS, Vella LA, Baxter AE, Wu JE, Khan O, Beltra JC, Giles JR, Stelekati E, McLane LM, Lau CW, Yang X, Berger SL, Vahedi G, Ji H, Wherry EJ. Chen Z, et al. Among authors: ji h, ji z. Immunity. 2019 Nov 19;51(5):840-855.e5. doi: 10.1016/j.immuni.2019.09.013. Epub 2019 Oct 9. Immunity. 2019. PMID: 31606264 Free PMC article.

2

Turning publicly available gene expression data into discoveries using gene set context analysis.

Ji Z, Vokes SA, Dang CV, Ji H. Ji Z, et al. Among authors: ji h. Nucleic Acids Res. 2016 Jan 8;44(1):e8. doi: 10.1093/nar/gkv873. Epub 2015 Sep 8. Nucleic Acids Res. 2016. PMID: 26350211 Free PMC article.

3

The Pluripotency Factor NANOG Binds to GLI Proteins and Represses Hedgehog-mediated Transcription.

Li Q, Lex RK, Chung H, Giovanetti SM, Ji Z, Ji H, Person MD, Kim J, Vokes SA. Li Q, et al. Among authors: ji h, ji z. J Biol Chem. 2016 Mar 25;291(13):7171-82. doi: 10.1074/jbc.M116.714857. Epub 2016 Jan 21. J Biol Chem. 2016. PMID: 26797124 Free PMC article.

4

TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis.

Ji Z, Ji H. Ji Z, et al. Among authors: ji h. Nucleic Acids Res. 2016 Jul 27;44(13):e117. doi: 10.1093/nar/gkw430. Epub 2016 May 13. Nucleic Acids Res. 2016. PMID: 27179027 Free PMC article.

5

Single-cell regulome data analysis by SCRAT.

Ji Z, Zhou W, Ji H. Ji Z, et al. Among authors: ji h. Bioinformatics. 2017 Sep 15;33(18):2930-2932. doi: 10.1093/bioinformatics/btx315. Bioinformatics. 2017. PMID: 28505247 Free PMC article.

6

Genome-wide prediction of DNase I hypersensitivity using gene expression.

Zhou W, Sherwood B, Ji Z, Xue Y, Du F, Bai J, Ying M, Ji H. Zhou W, et al. Among authors: ji h, ji z. Nat Commun. 2017 Oct 19;8(1):1038. doi: 10.1038/s41467-017-01188-x. Nat Commun. 2017. PMID: 29051481 Free PMC article.

7

Dynamic motif occupancy (DynaMO) analysis identifies transcription factors and their binding sites driving dynamic biological processes.

Kuang Z, Ji Z, Boeke JD, Ji H. Kuang Z, et al. Among authors: ji h, ji z. Nucleic Acids Res. 2018 Jan 9;46(1):e2. doi: 10.1093/nar/gkx905. Nucleic Acids Res. 2018. PMID: 29325176 Free PMC article.

8

Pseudotime Reconstruction Using TSCAN.

Ji Z, Ji H. Ji Z, et al. Among authors: ji h. Methods Mol Biol. 2019;1935:115-124. doi: 10.1007/978-1-4939-9057-3_8. Methods Mol Biol. 2019. PMID: 30758823

9

Sex differences in gene regulation in the dorsal root ganglion after nerve injury.

Stephens KE, Zhou W, Ji Z, Chen Z, He S, Ji H, Guan Y, Taverna SD. Stephens KE, et al. Among authors: ji h, ji z. BMC Genomics. 2019 Feb 19;20(1):147. doi: 10.1186/s12864-019-5512-9. BMC Genomics. 2019. PMID: 30782122 Free PMC article.

10

Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq.

Zhou W, Ji Z, Fang W, Ji H. Zhou W, et al. Among authors: ji h, ji z. Nucleic Acids Res. 2019 Nov 4;47(19):e121. doi: 10.1093/nar/gkz716. Nucleic Acids Res. 2019. PMID: 31428792 Free PMC article.

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